NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27018.1 Public Mus musculus 14 Or11g26 23 108 98 CCDS HistoryNCBI Gene:258422Re-query CCDS DB by CCDS ID:27018.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089836.2 ENSMUSP00000087273.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089836.2Link to Ensembl Protein Viewer:ENSMUSP00000087273.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000089836Re-query CCDS DB by Protein ID:ENSMUSP00000087273
Original member Current member EBI ENSMUST00000213935.1 ENSMUSP00000148928.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213935.1Link to Ensembl Protein Viewer:ENSMUSP00000148928.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213935Re-query CCDS DB by Protein ID:ENSMUSP00000148928
Original member Current member EBI ENSMUST00000217437.1 ENSMUSP00000150814.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217437.1Link to Ensembl Protein Viewer:ENSMUSP00000150814.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217437Re-query CCDS DB by Protein ID:ENSMUSP00000150814
Original member Current member NCBI NM_146430.2 NP_666641.2 Accepted alive Link to Nucleotide Sequence:NM_146430.2Link to Protein Sequence:NP_666641.2Re-query CCDS DB by Nucleotide ID:NM_146430Re-query CCDS DB by Protein ID:NP_666641Link to BLAST:NP_666641.2

Chromosomal Locations for CCDS 27018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50515206 50516141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGAAAACCCTCAGCAGCCCCAGCAACTCCAGCACCATCACTGGCTTCATCCTCTTGGGCTTCCCCTGCC
CCAGGGAGGGGCAAATCCTCCTCTTTGTGACCTTCTTCATTGTTTACATACTCATTCTTATGGGCAATGC
TTCCATCATCTGTGCTGTGTACTGTGATCAGAGCCTCCACACCCCCATGTACTTCCTGCTGGCCAACTTC
TCCTTCCTGGAGATCTGGTATGTCACCTCCACAGTCCCCAACATGTTGGCCAACTTCCTTTCAGACACCA
AGGTCATCTCTTTCTCTGGATGCTTCCTGCAGTTCTATTTCTTCTTCTCCTTTGGTTCTACAGAATGCTT
TTTCCTGGCAGTCATGGCATTTGATCGATACCTTGCCATCTGTAGGCCACTACATTATCCTTCTCTCATG
ACTGGGCACCTCTGCAACATCCTTGTGATCAGTTGCTGGGTGCTTGGTTTCCTCTGGTTCCCTGTACCCA
TCATCATCATCTCCCAGATGTCCTTCTGTGGGTCCAGAATTATAGACCACTTCCTGTGTGACCCAGGCCC
TCTTTTGGCCCTTGCCTGTTCCAGAGCCCCATTGATGGAGGTTTTCTGGACAATTATAATGTCTATGCTC
CTGGTTATTCCTTTCCTCTTCATCATGGGAACTTACATATTGGTCCTAAGAGCTGTGTTTAGACTTCCTT
CAAGAGATGGACAAAAAAAGGCCTTCTCCACTTGCGGGTCTCATCTCACAGTAGTTTCACTCTTTTATTG
CTCAGTGATGAAAATGTATTTGAGCCCAACATCTGAGCATGAAGCTGGAATGCAGAAGCTTGTAACTCTA
TTTTATTCTGTGGGTACTCCACTACTTAATCCTGTGATATACAGTCTGAGGAACAAAGATATGAAAAATG
CCCTGCAGAAGATTTTAAGAACATAA

Translation (311 aa):
MKTLSSPSNSSTITGFILLGFPCPREGQILLFVTFFIVYILILMGNASIICAVYCDQSLHTPMYFLLANF
SFLEIWYVTSTVPNMLANFLSDTKVISFSGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYPSLM
TGHLCNILVISCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRAPLMEVFWTIIMSML
LVIPFLFIMGTYILVLRAVFRLPSRDGQKKAFSTCGSHLTVVSLFYCSVMKMYLSPTSEHEAGMQKLVTL
FYSVGTPLLNPVIYSLRNKDMKNALQKILRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH