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Report for CCDS21570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21570.1 Public Mus musculus 7 Or52s19 23 108 98 CCDS HistoryNCBI Gene:258311Re-query CCDS DB by CCDS ID:21570.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080474.4 ENSMUSP00000079328.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080474.4Link to Ensembl Protein Viewer:ENSMUSP00000079328.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080474Re-query CCDS DB by Protein ID:ENSMUSP00000079328
Original member Current member EBI ENSMUST00000210431.2 ENSMUSP00000147592.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210431.2Link to Ensembl Protein Viewer:ENSMUSP00000147592.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210431Re-query CCDS DB by Protein ID:ENSMUSP00000147592
Original member Current member EBI ENSMUST00000217416.1 ENSMUSP00000150751.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217416.1Link to Ensembl Protein Viewer:ENSMUSP00000150751.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217416Re-query CCDS DB by Protein ID:ENSMUSP00000150751
Original member Current member EBI ENSMUST00000214110.1 ENSMUSP00000151190.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214110.1Link to Ensembl Protein Viewer:ENSMUSP00000151190.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214110Re-query CCDS DB by Protein ID:ENSMUSP00000151190
Original member Current member NCBI NM_146314.2 NP_666426.2 Accepted alive Link to Nucleotide Sequence:NM_146314.2Link to Protein Sequence:NP_666426.2Re-query CCDS DB by Nucleotide ID:NM_146314Re-query CCDS DB by Protein ID:NP_666426Link to BLAST:NP_666426.2

Chromosomal Locations for CCDS 21570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103358248 103359192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGGGCCAGCTAATAAGTCGCAACTCTCTCCAAGCACCTTCTGGCTGATGGGCATCCCAGGCCTAGAAC
ACCTTCATGTGTGGATTGGGATTCCCTTCTGTTCCATGTACATGGTGGCCCTGATGGGGAATGTGACTAT
CCTGGCCGTGGTGAGAGCAGAGCGCACCCTCCACGAGCCCATGTTCCTCTTCTTGTGCATGCTGTCTGTC
ACTGACCTGGTCCTCTCCACATCCACATTGCCACGCATGCTCTGTCTCTTCTGGATGGCAGCTCATGATA
TTACCTTCGACGCATGCCTTGCTCAAATGTTCTTCATCCACAGTTTCACTGCCATGGAATCTGGCTTCTT
CTTGGCCATGGCCATTGATCGCTATGTGGCCATCTGTGACCCACTGCGCCATGCCACAATTCTCACCCAC
AGCCGCATCGCCGTGATGGGAGCAGTTGTGGTGCTGCGTGGGGTAGGCTTCTTCTCCCCACACCCTGTCC
TGCTTAAGCAGCTGCCCTACTGCAGAACTCGAATCATTGCACACACCTACTGTGAGTTCATGGCTGTGGT
GAAGCTGGCATGTTTGGAGATAGGAGCCACCAAGCGTTACAGCCTTGGTGTTGCTTTTGGCATCGGCTCC
TGTGATTGTTTCTTCATTGCCATCTCCTATGTTCTGATCCTCCGTGCTGTCTTCCGGCTCCCATCCCGAG
AAGCAAGTCTTAAAGCTCTAGGCACTTGTGGCTCACATGTCTGTGTCATTGTTGTGTTCTACTCCACAGC
TGGGTTTACCTTCCTGACCCACCGTTTTGGCCACAATGTGGCCCCCCGAACTCATATTCTCATAGCCAAT
ATGTATTTATTGGTTCCACCATTTCTTAACCCCATTGTTTATGGTGTTAGGACCAAGAAAATTCGAGATT
ATGTTCTTAATACTCTAAAAGTAAAAGGCAGCTGA

Translation (314 aa):
MGPANKSQLSPSTFWLMGIPGLEHLHVWIGIPFCSMYMVALMGNVTILAVVRAERTLHEPMFLFLCMLSV
TDLVLSTSTLPRMLCLFWMAAHDITFDACLAQMFFIHSFTAMESGFFLAMAIDRYVAICDPLRHATILTH
SRIAVMGAVVVLRGVGFFSPHPVLLKQLPYCRTRIIAHTYCEFMAVVKLACLEIGATKRYSLGVAFGIGS
CDCFFIAISYVLILRAVFRLPSREASLKALGTCGSHVCVIVVFYSTAGFTFLTHRFGHNVAPRTHILIAN
MYLLVPPFLNPIVYGVRTKKIRDYVLNTLKVKGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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