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Report for CCDS27021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27021.1 Public Mus musculus 14 Or11h7 23 108 98 CCDS HistoryNCBI Gene:258295Re-query CCDS DB by CCDS ID:27021.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27021.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080616.2 ENSMUSP00000079451.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080616.2Link to Ensembl Protein Viewer:ENSMUSP00000079451.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080616Re-query CCDS DB by Protein ID:ENSMUSP00000079451
Original member Current member EBI ENSMUST00000218546.1 ENSMUSP00000151399.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218546.1Link to Ensembl Protein Viewer:ENSMUSP00000151399.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218546Re-query CCDS DB by Protein ID:ENSMUSP00000151399
Original member Current member NCBI NM_146298.2 NP_666410.2 Accepted alive Link to Nucleotide Sequence:NM_146298.2Link to Protein Sequence:NP_666410.2Re-query CCDS DB by Nucleotide ID:NM_146298Re-query CCDS DB by Protein ID:NP_666410Link to BLAST:NP_666410.2

Chromosomal Locations for CCDS 27021.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50653239 50654183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGAACGTGTCAGAGGGATCCACGGTGACATATTTTGTCTTATTGGGATTCCCTGGTCCCTGGAAGATTC
AAATCATACTTTTCTCACTGATTCTGCTGCTCTACATGATAACTTTGACTGGGAATATGGCCATCATTTG
TGCAGTGAGATGGAACCAACAACTCCACACCCCTATGTATATGTTCCTGGCCAACTTCTCCTTCCTAGAA
ATCTGGTACGTGACCTGCACAGTTCCCAACATGCTGGTCAACTCTCTTTCCAAAACTAAGACTATATCCT
TCACTGGATGCTTTACTCAGTTCTACTTCTTCTTCTCCCTGGGCACAACTGAATGCTTCTTCCTCTGTGC
CATGGCTTATGATCGGTACCTAGCCATCTGCTACCCACTGCACTATCCTTCCATCATGACTAGGCAATTC
TGCAGTATTCTGATGTCCCTCTGTTGGATCATTGGTTTCTCTGCACATTTGATTCCCATTTTCTTTATTT
CTCAATTGTCTTTCTGTGGCCCCAATATCATTGATCACTTTCTCTGTGATGTGGACCCACTAATAGCACT
GTCCTGTACCCCTACACACATCATAAGGCATGTATTCTATTCTATAAGTACTCTTATCATTATTCTCACT
GGTTTGTACATCCTTGGATCTTATGCCTTGGAGCTCAGAGCTGTTCTTCAGGTTCCTTCTTCAGATGGAC
GTCAAAAGGCCTTCTCAACCTGTGGATCCCACCTGCTGGTAGTGTCTCTGTTCTATGGAACCATAATGGT
GATGTATGTCAGCCCCACATCTGGCAACTCAGTTGACATGAATAAAATTATCACACTGATATATTCTGTG
GTGACACCAGCTTTAAATCCTTTCATCTATAGTCTGCGTAACAAGGATATGAAATATGCTCTCCATCATG
TCTTCTTTGGGAATAGCATTATGCAAAACTTATAA

Translation (314 aa):
MNVSEGSTVTYFVLLGFPGPWKIQIILFSLILLLYMITLTGNMAIICAVRWNQQLHTPMYMFLANFSFLE
IWYVTCTVPNMLVNSLSKTKTISFTGCFTQFYFFFSLGTTECFFLCAMAYDRYLAICYPLHYPSIMTRQF
CSILMSLCWIIGFSAHLIPIFFISQLSFCGPNIIDHFLCDVDPLIALSCTPTHIIRHVFYSISTLIIILT
GLYILGSYALELRAVLQVPSSDGRQKAFSTCGSHLLVVSLFYGTIMVMYVSPTSGNSVDMNKIITLIYSV
VTPALNPFIYSLRNKDMKYALHHVFFGNSIMQNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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