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Report for CCDS24340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24340.1 Public Mus musculus 10 Or6c76b 23 108 98 CCDS HistoryNCBI Gene:258252Re-query CCDS DB by CCDS ID:24340.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24340.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064893.2 ENSMUSP00000063431.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064893.2Link to Ensembl Protein Viewer:ENSMUSP00000063431.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000064893Re-query CCDS DB by Protein ID:ENSMUSP00000063431
Original member Current member EBI ENSMUST00000204622.2 ENSMUSP00000145260.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204622.2Link to Ensembl Protein Viewer:ENSMUSP00000145260.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000204622Re-query CCDS DB by Protein ID:ENSMUSP00000145260
Original member Current member NCBI NM_207147.1 NP_997030.1 Accepted alive Link to Nucleotide Sequence:NM_207147.1Link to Protein Sequence:NP_997030.1Re-query CCDS DB by Nucleotide ID:NM_207147Re-query CCDS DB by Protein ID:NP_997030Link to BLAST:NP_997030.1

Chromosomal Locations for CCDS 24340.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 129856520 129857452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGAGGAACAGAACTTCAGTGACATACTTCATCCTCCTGGGTCTGACAGACGATCCTGAGCTTGAGGTTG
TGATTTTCTTTTTTCTGTTTCTCACTTACTTGCTGAGCATTACCGGAAATTTAACCATCATTACTCTCAC
ACTGCTGGATTCCCACCTGAAGACACCCATGTATTTCTTCCTCAGGAATTTCTCCTTCCTAGAAATCTCA
TTTACTTCTGTCTGTAACCCTAGGTTTTTGGTCAGCATCTTAACTAAGGACAAATCAATCTCCTATAATG
CATGTGTTGCCCAACTATTTTTCTTTATCTTCCTTGGCTCAACAGAGTTTTTCCTTCTGGCATCCATGTC
CTATGATCGCTATGTGGCTATTTGCAAGCCTCTGCACTATACAACCATCATCAGTAACAAGATCTGCCAC
CAGCTCATCATCAGCTCCTGGCTGGCTGGTTTCTTGGTAATTTTTCCTCCACTGGCCATGGGTTTAGAGC
TAGATTTCTGTGACTCCAACATTATTGACCACTTCACTTGTGACTCTGCTCCTTTGCTGCAAATATCCTG
CACAGACACAAGCACCTTGGAGCTCATGAGCTTTATATTAGCTTTGATCACGCTTATGACCACCCTGATG
CTGATAATTCTTTCTTACATATGCATTCTCAGAACAATTCTGAAATTTCCCTCAGCCAAACAAAGGGAAA
AGGCCTTTTCAACCTGCTCCTCACATATGATTGTTATCTCCATATCCTATGGAAGCTGCATCTTCATGTA
TGTGAAAACATCTGCCAAGGCTGGAGTTGCTTTAACAAAGGGGGTGGCTATGCTCAACACCTCTGTTGCT
CCCATGCTGAATCCTTTTATTTACACTTTAAGGAACCAGCAGGTGAAACAAGCATTTAAGGACCTTGTAA
GAAGAAAACTTGCCTCAAAATGA

Translation (310 aa):
MRNRTSVTYFILLGLTDDPELEVVIFFFLFLTYLLSITGNLTIITLTLLDSHLKTPMYFFLRNFSFLEIS
FTSVCNPRFLVSILTKDKSISYNACVAQLFFFIFLGSTEFFLLASMSYDRYVAICKPLHYTTIISNKICH
QLIISSWLAGFLVIFPPLAMGLELDFCDSNIIDHFTCDSAPLLQISCTDTSTLELMSFILALITLMTTLM
LIILSYICILRTILKFPSAKQREKAFSTCSSHMIVISISYGSCIFMYVKTSAKAGVALTKGVAMLNTSVA
PMLNPFIYTLRNQQVKQAFKDLVRRKLASK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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