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Report for CCDS21548.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21548.2 Reviewed, update pending Mus musculus 7 Or51f1 23 108 98 CCDS HistoryNCBI Gene:258168Re-query CCDS DB by CCDS ID:21548.2See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21548.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000209952.1 ENSMUSP00000148058.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209952.1Link to Ensembl Protein Viewer:ENSMUSP00000148058.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209952Re-query CCDS DB by Protein ID:ENSMUSP00000148058
Original member Current member EBI ENSMUST00000213481.1 ENSMUSP00000148998.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213481.1Link to Ensembl Protein Viewer:ENSMUSP00000148998.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213481Re-query CCDS DB by Protein ID:ENSMUSP00000148998
Original member Current member NCBI NM_001011536.2 NP_001011536.2 Pending alive Link to Nucleotide Sequence:NM_001011536.2Link to Protein Sequence:NP_001011536.2Re-query CCDS DB by Nucleotide ID:NM_001011536Re-query CCDS DB by Protein ID:NP_001011536Link to BLAST:NP_001011536.2

Chromosomal Locations for CCDS 21548.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102856321 102857280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGCTACATATGCAGGACAACACAGAATTCCTAAGCAACTTCACATCGCAATTACCAACCTTCTTGTTGA
CTGGCATTCCTGGCCTAGAGTCTGCTCACAGCTGGATCTCCATCCCTTTCTGTTGTCTTTATGCCACTGC
CCTCTCTGGCAACAGCATGATCCTCTTCATCATTGTGACCCAGCATAGTCTGCATGAACCTATGTACTAT
TTCCTCTCTGTGCTCTCTGCCACTGACCTGGGTTTGACTTTTTCTACAATGTCAACTACCTTGAGAATCC
TGTGGTTTCAGGCAAATGAAATCAGTCTAGATTTTTGCATTGTTCAGATGTTTTTTCTCCATGGATTCAC
ATTTATAGAATCTGGAGTGCTAGTGGCTATGGCTTTTGATCGTTATGTAGCGATCTGCAACCCTCTTAGA
TATACCATGATTCTTACTAATTCTAGAATCATTCAGATGGGTTTCCTAGTGATAATGCGTGCTCTGTTAT
TAATAGTCCCACTGCTTCTGCTCCTTAAACCTGTCTCTTTCTGTAAAAGGAATACCCTCTCCCACTCCTA
CTGTTATCATCCAGATGTGATTAAGTTAGCATGTTCAGACACTCGAGCCAATAGCATCTGTGGACTAGTT
GATCTCATTCTGACCACAGGGATAGATACTCCATGCATTGTCTTATCTTATATACTGATCATTCGCTCTG
TCCTCAGTATCGCCTCCTCTGAAGAAAGGCACAAGACCTTCAGCACCTGTGTGTCCCACATTGGAGCAGT
TGCAGTTTTCTACATCCCAATGTTTAGCCTGTCTCTGGTACATCGATATGGTCGGTCAGCACCCAAGGTA
GTCCATACAATGATGGCCAATGTTTACCTTCTTCTACCCCCTGTGCTCAACCCCATCATCTACAGTGTGA
AAACAAAACAAATCAGAAAGGCTATTCTTAGTTTGCTCTTTGCAAAATGA

Translation (319 aa):
MLHMQDNTEFLSNFTSQLPTFLLTGIPGLESAHSWISIPFCCLYATALSGNSMILFIIVTQHSLHEPMYY
FLSVLSATDLGLTFSTMSTTLRILWFQANEISLDFCIVQMFFLHGFTFIESGVLVAMAFDRYVAICNPLR
YTMILTNSRIIQMGFLVIMRALLLIVPLLLLLKPVSFCKRNTLSHSYCYHPDVIKLACSDTRANSICGLV
DLILTTGIDTPCIVLSYILIIRSVLSIASSEERHKTFSTCVSHIGAVAVFYIPMFSLSLVHRYGRSAPKV
VHTMMANVYLLLPPVLNPIIYSVKTKQIRKAILSLLFAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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