NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18564.1 Public Mus musculus 4 Or10ak9 23 108 98 CCDS HistoryNCBI Gene:258159Re-query CCDS DB by CCDS ID:18564.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094831.1 ENSMUSP00000092426.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094831.1Link to Ensembl Protein Viewer:ENSMUSP00000092426.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000094831Re-query CCDS DB by Protein ID:ENSMUSP00000092426
Original member Current member EBI ENSMUST00000106360.2 ENSMUSP00000101967.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106360.2Link to Ensembl Protein Viewer:ENSMUSP00000101967.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106360Re-query CCDS DB by Protein ID:ENSMUSP00000101967
Original member Current member NCBI NM_001011856.2 NP_001011856.2 Accepted alive Link to Nucleotide Sequence:NM_001011856.2Link to Protein Sequence:NP_001011856.2Re-query CCDS DB by Nucleotide ID:NM_001011856Re-query CCDS DB by Protein ID:NP_001011856Link to BLAST:NP_001011856.2

Chromosomal Locations for CCDS 18564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118868783 118869736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGATTCCAGGGCAAAACCAAAGTTGGGTTTCTGAGTTCATCCTGATTGGCTTCTCCAGTGACCCCACGA
CCAACAGCATCCTCTTCATTGTCTTTCTTCTCATCTACCTGAGCTCAGTCCTGGGCAATGGGCTCATCAT
CATGCTGGTCTGCCTGGACACACAGCTGCACACTCCCATGTACTTCTTCCTCTCTACCCTCTCCCTGTTG
GATATGACCTTTGTTACCACCACCATGCCCCAGATGTTGGTGCATCTTCTTGCTCACTCTCAAACCATCT
CCTTTACTGGCTGCTGGCTGCAGATGTTTATGTTCGGTGGCCTGGGTATAACTGAGTGCACCTTCTTTGT
TGTCATGGCTTATGATCGTTATGTGGCCATTTGCTATCCACTGAGCTATACTGTCATCCTCAACTGGGGC
CTCTGCATACGGTTGGCAGCAGGGTCTTGTATTTGTGGTTTCTTTTCCTCTTTATTGCACACTTTCTTCA
CCATGAGTCTGCCATATTGTGGGCCCAACAGGGTCAACCACTACTTGTGTGAAGGTCCTTCAGTGCGTAG
CTTGGCTTGCATGGATACCCACATCATTGAGATGGTGGACTTGGTCTTGAGTGTCTTTTTGGTCGTTACT
CCAATCTCCCTCATTGTGGCCTCCTACATTCGTATTGCCATGGCAATTCTCAAGATCAAGTCCACAGAGG
GCCGCTGCAAGGCTTTCTCTACATGTGCCTCCCACCTGACTGTGGTCACATTCTTCTATGCTCCAGCCAC
TTACACTTACTTGAGGCCCAACTCCAGTTACTCCCCTGAGAGAGACAAGCAGATCTCACTCTTTTACAGT
GCTTTTACACCATTGCTCAACCCTGTGGTCTATAGTCTGAGGAACAAAGACATCAAGAGGGCATTTCTCA
AGGTGATGGGTTATGGCAGGTGTGCCAGTGGACCAGGATGGTGA

Translation (317 aa):
MIPGQNQSWVSEFILIGFSSDPTTNSILFIVFLLIYLSSVLGNGLIIMLVCLDTQLHTPMYFFLSTLSLL
DMTFVTTTMPQMLVHLLAHSQTISFTGCWLQMFMFGGLGITECTFFVVMAYDRYVAICYPLSYTVILNWG
LCIRLAAGSCICGFFSSLLHTFFTMSLPYCGPNRVNHYLCEGPSVRSLACMDTHIIEMVDLVLSVFLVVT
PISLIVASYIRIAMAILKIKSTEGRCKAFSTCASHLTVVTFFYAPATYTYLRPNSSYSPERDKQISLFYS
AFTPLLNPVVYSLRNKDIKRAFLKVMGYGRCASGPGW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH