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Report for CCDS52357.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52357.1 Public Mus musculus 7 Or10a49 23 108 98 CCDS HistoryNCBI Gene:258136Re-query CCDS DB by CCDS ID:52357.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52357.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084753.2 ENSMUSP00000081805.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084753.2Link to Ensembl Protein Viewer:ENSMUSP00000081805.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000084753Re-query CCDS DB by Protein ID:ENSMUSP00000081805
Original member Current member EBI ENSMUST00000216500.1 ENSMUSP00000150980.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216500.1Link to Ensembl Protein Viewer:ENSMUSP00000150980.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216500Re-query CCDS DB by Protein ID:ENSMUSP00000150980
Original member Current member NCBI NM_001011846.1 NP_001011846.1 Accepted alive Link to Nucleotide Sequence:NM_001011846.1Link to Protein Sequence:NP_001011846.1Re-query CCDS DB by Nucleotide ID:NM_001011846Re-query CCDS DB by Protein ID:NP_001011846Link to BLAST:NP_001011846.1

Chromosomal Locations for CCDS 52357.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 108868208 108869152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGAGGGGGCAGAATGACAGCTCTGTGGCTGAGTTCATCCTCTTGGGATTTTCGAACTATCCTGAACTCC
AAAGGCAAATGTTTGGGGCTTTCTTAGTTATTTACCTGGTGACTCTGACTGGAAATGCCCTCATTATGTC
TGTCATCCTCCTGGACCGGAGCCTGCATATCCCCATGTACCTGTTCTTGCAGAACTTGTCTGTGGTGGAG
ACTGGCTTCAGCACAACTGTTATGCCTGAGATGCTGGTGGTCCTGACTAGTGAGAAAGCGACCATTTCCT
TTGGGGGCTGTTTTGCACAGATGTATTTCATTCTTCTCTTTGGTGGGACTGAGTGTTTTCTCTTGGGGGC
AATGGCTTATGATCGATTTGCTGCAATCTGCCATCCTCTATCCTACCCTGTGATTATGAACAAAAGAGTT
TTTATGACGTTAGTGACATGCTCATGGCTCTCAGGAACCATGATGACTACTTTGCAGACCATATGGGTGT
TCAGTTTCCCCTACTGTGGCTCCAATGAAATTAACCACATCTCATGTGAAACCCCAGCAGTACTGGAGCT
TGCATGTACAGACATTTTTTTCTTTGAGATCTATGCCTTCACAGGCACTGTTCTGATCATTTTGACTCCC
TTCGTGCTGATTCTTTTGTCTTACATCCGAATCCTCTTCTCCATCCTGAAGATGCCATCCACTACAGGGA
GGCAGAAGGCCTTTTCCACGTGTGCCTCTCATCTCACCTCGGTCACCCTCTTCTATGGCACGGCCAGTAT
GACCTATCTGCAGCCTAAATCCAAGTACTCACCAGACACCAAGAAACTGATGTCATTGGCTTACTCTCTG
CTCACTCCTCTGCTGAATCCACTTATCTACAGCCTGAGAAACAAGGAGATGAAAAGGGCTGTGGTAAAAT
TATGGGAAAGAAAAGTGGCTTTACACACAACCTGA

Translation (314 aa):
MRGQNDSSVAEFILLGFSNYPELQRQMFGAFLVIYLVTLTGNALIMSVILLDRSLHIPMYLFLQNLSVVE
TGFSTTVMPEMLVVLTSEKATISFGGCFAQMYFILLFGGTECFLLGAMAYDRFAAICHPLSYPVIMNKRV
FMTLVTCSWLSGTMMTTLQTIWVFSFPYCGSNEINHISCETPAVLELACTDIFFFEIYAFTGTVLIILTP
FVLILLSYIRILFSILKMPSTTGRQKAFSTCASHLTSVTLFYGTASMTYLQPKSKYSPDTKKLMSLAYSL
LTPLLNPLIYSLRNKEMKRAVVKLWERKVALHTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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