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Report for CCDS16304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16304.1 Public Mus musculus 2 Or5w14 23 108 98 CCDS HistoryNCBI Gene:258101Re-query CCDS DB by CCDS ID:16304.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16304.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099850.1 ENSMUSP00000097437.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099850.1Link to Ensembl Protein Viewer:ENSMUSP00000097437.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099850Re-query CCDS DB by Protein ID:ENSMUSP00000097437
Original member Current member EBI ENSMUST00000214209.1 ENSMUSP00000149311.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214209.1Link to Ensembl Protein Viewer:ENSMUSP00000149311.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214209Re-query CCDS DB by Protein ID:ENSMUSP00000149311
Original member Current member NCBI NM_001011833.1 NP_001011833.1 Accepted alive Link to Nucleotide Sequence:NM_001011833.1Link to Protein Sequence:NP_001011833.1Re-query CCDS DB by Nucleotide ID:NM_001011833Re-query CCDS DB by Protein ID:NP_001011833Link to BLAST:NP_001011833.1

Chromosomal Locations for CCDS 16304.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87710972 87711904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGACAAAGAAAACTGTTCTTCGTTGCCAGAATTCTTTCTCTTGGGTATTAGTAGTAAGTATGGTGTGA
AA
GTGGTTTTGTTTGTAGTGTTCCTGCTTGTTTATCTCACTACTCTGCTGGAAAACATAGGAATGATCGC
A
CTGATCAGAATGGACCCCCAGCTTCACACACCAATGTATTTCTTCCTCAGCCACCTGTCTTTCTCTGAT
CTC
TGCTACTCCACCGCAGTTGGACCCAGGATGCTGGTAGACCTAGTAGCCGAGAAACATTCAATTCCTT
TT
ACTGGTTGTTTTCTGCAGCTTTTGTTTGTCTATGTCTTTATAGATGTTGAATGCATGCTGCTGGCAGT
G
ATGGCTTTTGATAGATACAAGGCCATCAGCAAACCCCTTCTGTATTCTGTGGACATGTCCAGCAAGGTG
TGC
TACCAGTTTTTAACTTTAATTTACCTGACAAGTACTATAGATGGTTTGATACATACAACACTGGCAT
TT
AATTTATGTTTTTGTGGCTCTACTCAGATCAATCATTTTTTCTGTGATTTACCACCACTGTACCTCCT
T
TCCTGTTCTGACACACAAGCAAACGAGCTAGTTGTATTTACTCTTTTTGGTTTCATTGAACTGAGCACA
ATC
TCAAGTGTCCTGGTCTCCTATTGTTACATCATCTCATCAGTCTTGAAGATCAGCTCTGCTGGGGGAC
GC
TTCAAGGCTTTCTCCACCTGTGCCTCTCACCTGACTGCAGTTGGGATTTTCCAGGGGACCATGCTCTT
C
ATGTATTTCAGACCAAGTTCTGCCTACTCTCTAGACCAAGACAAAATGACATCTGTCTTTTACCTCCTC
ATT
ATCCCCATGATAAACCCTCTGATTTACAGTCTACGGAATAAGGATGTGAAAGAAGCTCTGGTTAGGC
TC
AGAAATAAAAGATTGTTTTAA


Translation (310 aa):
MDKENCSSLPEFFLLGISSKYGVKVVLFVVFLLVYLTTLLENIGMIALIRMDPQLHTPMYFFLSHLSFSD
L
CYSTAVGPRMLVDLVAEKHSIPFTGCFLQLLFVYVFIDVECMLLAVMAFDRYKAISKPLLYSVDMSSKV
C
YQFLTLIYLTSTIDGLIHTTLAFNLCFCGSTQINHFFCDLPPLYLLSCSDTQANELVVFTLFGFIELST
I
SSVLVSYCYIISSVLKISSAGGRFKAFSTCASHLTAVGIFQGTMLFMYFRPSSAYSLDQDKMTSVFYLL
I
IPMINPLIYSLRNKDVKEALVRLRNKRLF




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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