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Report for CCDS13850.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13850.1 Public Homo sapiens 22 RHBDD3 24 110 108 CCDS HistoryNCBI Gene:25807Re-query CCDS DB by CCDS ID:13850.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13850.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216085.12 ENSP00000216085.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000216085.12Link to Ensembl Protein Viewer:ENSP00000216085.7Re-query CCDS DB by Nucleotide ID:ENST00000216085Re-query CCDS DB by Protein ID:ENSP00000216085
Original member Current member NCBI NM_001329536.1 NP_001316465.1 Accepted alive Link to Nucleotide Sequence:NM_001329536.1Link to Protein Sequence:NP_001316465.1Re-query CCDS DB by Nucleotide ID:NM_001329536Re-query CCDS DB by Protein ID:NP_001316465Link to BLAST:NP_001316465.1
Original member Current member NCBI NM_012265.3 NP_036397.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012265.3Link to Protein Sequence:NP_036397.1Re-query CCDS DB by Nucleotide ID:NM_012265Re-query CCDS DB by Protein ID:NP_036397Link to BLAST:NP_036397.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316465.1 386 Q9Y3P4 386 100% 0 0
NP_036397.1 386 Q9Y3P4 386 100% 0 0

Chromosomal Locations for CCDS 13850.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 29260060 29260237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 29260326 29260613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 29260702 29260864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 29263835 29264218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 29265479 29265626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGCATGCCAGGGGCCCCCATGGCCAACTGTCCCCAGCACTGCCTCTGGCCTCCTCAGTCCTGATGCTGC
TGATGAGCACCCTGTGGCTGGTGGGGGCCGGCCCCGGCCTGGTCCTGGCCCCGGAGCTGTTGCTGGACCC
CTGGCAGGTGCACCGGCTGCTGACCCATGCCCTGGGCCACACGGCCCTGCCAGGCCTGCTCCTGAGCCTG
CTGCTCCTGCCCACTGTGGGCTGGCAGCAGGAGTGCCACCTGGGCACGCTGAGATTCCTGCATGCCTCAG
CCCTGCTCGCCCTGGCTTCTGGGCTGCTGGCAGTGCTGCTGGCAGGCCTTGGGCTGTCCAGTGCAGCCGG
CAGCTGTGGATACATGCCTGTCCACCTGGCCATGCTGGCTGGGGAGGGACACCGCCCTAGACGGCCCCGT
GGGGCACTGCCACCGTGGCTGTCGCCGTGGCTGCTGCTTGCCCTGACCCCACTGCTCAGCTCTGAGCCAC
CCTTCCTGCAGCTCCTTTGCGGCCTCCTTGCCGGCCTGGCCTATGCAGCTGGGGCCTTCCGGTGGCTGGA
ACCCTCAGAGCGACGGCTGCAGGTGCTGCAGGAGGGCGTCTTGTGCAGGACCTTGGCGGGGTGCTGGCCC
CTGAGGCTCCTTGCCACCCCGGGTAGCCTGGCGGAGCTGCCTGTCACCCATCCTGCCGGAGTGAGGCCTC
CCATCCCTGGACCGCCTTATGTGGCCTCCCCTGACCTCTGGTCCCACTGGGAAGACTCAGCCCTGCCCCC
ACCAAGCCTGAGGCCTGTGCAGCCCACCTGGGAGGGCTCCTCAGAGGCAGGCCTGGACTGGGCTGGGGCC
AGCTTCTCCCCAGGGACTCCGATGTGGGCGGCCTTGGATGAGCAGATGCTGCAGGAGGGCATCCAGGCCT
CGCTTCTTGACGGGCCAGCCCAGGAACCCCAGAGCGCACCATGGCTGTCCAAGTCCTCTGTCTCCTCTCT
GCGGCTGCAGCAGCTGGAGCGCATGGGCTTCCCTACGGAGCAGGCGGTGGTGGCACTGGCAGCCACAGGC
CGTGTGGAGGGTGCCGTGTCACTGTTGGTTGGAGGACAAGTGGGCACTGAGACCCTGGTGACCCATGGAA
AGGGTGGGCCTGCCCACTCCGAGGGTCCTGGGCCTCCCTAG

Translation (386 aa):
MHARGPHGQLSPALPLASSVLMLLMSTLWLVGAGPGLVLAPELLLDPWQVHRLLTHALGHTALPGLLLSL
LLLPTVGWQQECHLGTLRFLHASALLALASGLLAVLLAGLGLSSAAGSCGYMPVHLAMLAGEGHRPRRPR
GALPPWLSPWLLLALTPLLSSEPPFLQLLCGLLAGLAYAAGAFRWLEPSERRLQVLQEGVLCRTLAGCWP
LRLLATPGSLAELPVTHPAGVRPPIPGPPYVASPDLWSHWEDSALPPPSLRPVQPTWEGSSEAGLDWAGA
SFSPGTPMWAALDEQMLQEGIQASLLDGPAQEPQSAPWLSKSSVSSLRLQQLERMGFPTEQAVVALAATG
RVEGAVSLLVGGQVGTETLVTHGKGGPAHSEGPGPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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