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Report for CCDS21969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21969.1 Public Mus musculus 7 Or6b13 23 108 98 CCDS HistoryNCBI Gene:258055Re-query CCDS DB by CCDS ID:21969.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21969.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051943.5 ENSMUSP00000053565.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051943.5Link to Ensembl Protein Viewer:ENSMUSP00000053565.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000051943Re-query CCDS DB by Protein ID:ENSMUSP00000053565
Original member Current member EBI ENSMUST00000215815.1 ENSMUSP00000150970.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215815.1Link to Ensembl Protein Viewer:ENSMUSP00000150970.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215815Re-query CCDS DB by Protein ID:ENSMUSP00000150970
Original member Current member NCBI NM_001011814.1 NP_001011814.1 Accepted alive Link to Nucleotide Sequence:NM_001011814.1Link to Protein Sequence:NP_001011814.1Re-query CCDS DB by Nucleotide ID:NM_001011814Re-query CCDS DB by Protein ID:NP_001011814Link to BLAST:NP_001011814.1

Chromosomal Locations for CCDS 21969.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140201812 140202768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGTTTGCCAGGAGGAACAGCTCAGATGTGACTGAGTTCATCCTTGTAGGATTCTCAGGCTCCCTGGGGC
TCCACCTAAGCCTTCTAGGGCTGTTCTTGCTGGCTTACATGCTGACTGTCACAGAGAACCTGGTCATCAT
CACAGTCATTCGCGCCAGCCCCTCACTGCACAAGCCTATGTACCTCTTCCTCAGCAACCTGTCCTTCCTA
GAGATCTGGTACATCTCTGTCACGGTGCCCAAGATGTTGCTCAGCCTGGTCTCTCCCAAGTTCCAGCACA
TCTCCTTCACAGGCTGCATGGCCCAACTGTACTTCTTCTTGGCACTGGCCTGTACCGAGTGCGCGCTCTT
GGGTGTCATGGCCTATGACCGCTATGTGGCGGTCTGCAACCCGCTTCGCTACCCAGTCATCATGAGCCCC
GGTCTCTGCAGCCTCCTGGCTGGAGGCTCCTGGTTGTCTGGCTTCACCATTTCCCTGGGGAAGGTCTTCT
TCATTTCTCGTCTAGGCTACTGTGGCCCCAACGTCATGAACCACTTCTTCTGTGATGTGTCCCCACTACT
CAACCTTGCCTGCTCTGACATGTCAGTTGCAGAGCTTGTAGACTTCCTCCTGGCGCTGCTCATCTTGTTG
GGGCCACTGCTGTTGACTGTCTTCTCCTACACGGCCATTCTCAGCACCGTGCTACGCATGCCCTCCGCCG
GTGGCAGGCAGAAGGCCTTCTCCACCTGCGCCTCACACCTGGCCGTGGTGGTCATCTTCTATTCAGCTTC
TCTCTTCATCTATGCCCGGCCCCGTGCCCTCTACTCCTTCGACTACAACAAGCTTGTGTCTGTTGTCTAC
ACAGTGCTCACACCCCTAATTAACCCCATCATCTACTGCCTTCGGAACCAAGAGGTCAAGCAAGCGCTAC
ATAAGGTACAGCAGCGAGCAGCCCAGGTTCTAGGCGCCTCCTCCTAG

Translation (318 aa):
MFARRNSSDVTEFILVGFSGSLGLHLSLLGLFLLAYMLTVTENLVIITVIRASPSLHKPMYLFLSNLSFL
EIWYISVTVPKMLLSLVSPKFQHISFTGCMAQLYFFLALACTECALLGVMAYDRYVAVCNPLRYPVIMSP
GLCSLLAGGSWLSGFTISLGKVFFISRLGYCGPNVMNHFFCDVSPLLNLACSDMSVAELVDFLLALLILL
GPLLLTVFSYTAILSTVLRMPSAGGRQKAFSTCASHLAVVVIFYSASLFIYARPRALYSFDYNKLVSVVY
TVLTPLINPIIYCLRNQEVKQALHKVQQRAAQVLGASS


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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