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Report for CCDS27055.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27055.1 Public Mus musculus 14 Or10g3b 23 108 98 CCDS HistoryNCBI Gene:258008Re-query CCDS DB by CCDS ID:27055.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27055.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089739.1 ENSMUSP00000087171.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089739.1Link to Ensembl Protein Viewer:ENSMUSP00000087171.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000089739Re-query CCDS DB by Protein ID:ENSMUSP00000087171
Original member Current member EBI ENSMUST00000215147.1 ENSMUSP00000149216.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215147.1Link to Ensembl Protein Viewer:ENSMUSP00000149216.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215147Re-query CCDS DB by Protein ID:ENSMUSP00000149216
Original member Current member NCBI NM_001012269.2 NP_001012269.2 Accepted alive Link to Nucleotide Sequence:NM_001012269.2Link to Protein Sequence:NP_001012269.2Re-query CCDS DB by Nucleotide ID:NM_001012269Re-query CCDS DB by Protein ID:NP_001012269Link to BLAST:NP_001012269.2

Chromosomal Locations for CCDS 27055.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 52349103 52350044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGAAAGAGTCAACTATACAGTCTTGACTGAGTTCATCCTCACAGGGGTCCCCCACCCTCCCGGGCTGA
GGACATTCCTGTTTGTGTTCTTTTTGCTGATCTACATCCTGACTCAGCTGGGGAACATGATCATCCTGAT
CACCGTCTGCACCGACACGCAGCTCCATGCTCGCCCCATGTACATCTTCCTTGGTGCTCTTTCCGTCATC
GACATGGGCATCTCTACCATCATCGTCCCCCGCCTCATGATGAACTTCACTCCAGGCATTAAGCCCATCC
CATTTGGGGGATGCGTGGCTCAGCTTTATTTCTACCACTTTCTGGGCAGTACTGTATGTTATCTCTACAC
CACTATGGCCTATGACAGGTACCTGGCCATATGCCAACCCCTGCGTTACCCAGTCCTCATGTCTGCTAAG
TTGAGTACCTTGCTCGTGGCTGGAGCTTGGGTGGCTGGCTTAATCCACGGAGCAATCCAAGCCATCCTAA
CCTTCCGCTTGCCCTACTGTGGTCCCAATCAGGTAGATTACTTCTTCTGTGACATTCCTGCAGTGCTGAA
GCTAGCCTGTGCAGATACCACAGTCAATGAGTTGTTCACCTTTGTGGACATTGGAGTGGTGGTTGCCAGT
TGCTTCTCTCTGATCCTTCTTTCCTACATCTATATCATTCGGGCCATCCTGAGAATCCGCACAGCTGATG
GGAGGCGAAGGGCCTTTTCAACATGTGGGGCCCATGTAACCATGGTTACTGTGTACTATGTGCCCTGTGC
CTTCACCTACCTGCGACCTGACAGCCATGGCATCCTGGATGGGGCGGCTGCTCTCTTCCCCACAGCCATC
ACACCTTTCCTCAATCCCCTCATCTATACCCTGAGGAACCAGGAGGTGAAGATGGCCTTGAGGAGAATGG
TAGGAAGCCAAAGCACTAAGAGTGAGGTCTGA

Translation (313 aa):
MERVNYTVLTEFILTGVPHPPGLRTFLFVFFLLIYILTQLGNMIILITVCTDTQLHARPMYIFLGALSVI
DMGISTIIVPRLMMNFTPGIKPIPFGGCVAQLYFYHFLGSTVCYLYTTMAYDRYLAICQPLRYPVLMSAK
LSTLLVAGAWVAGLIHGAIQAILTFRLPYCGPNQVDYFFCDIPAVLKLACADTTVNELFTFVDIGVVVAS
CFSLILLSYIYIIRAILRIRTADGRRRAFSTCGAHVTMVTVYYVPCAFTYLRPDSHGILDGAAALFPTAI
TPFLNPLIYTLRNQEVKMALRRMVGSQSTKSEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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