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Report for CCDS22644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22644.1 Public Mus musculus 8 Nip7 23 108 98 CCDS HistoryNCBI Gene:66164Re-query CCDS DB by CCDS ID:22644.1Re-query CCDS DB by GeneID:66164See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22644.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034392.12 ENSMUSP00000034392.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034392.12Link to Ensembl Protein Viewer:ENSMUSP00000034392.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034392Re-query CCDS DB by Protein ID:ENSMUSP00000034392
Original member Current member NCBI NM_025391.2 NP_079667.2 Accepted alive Link to Nucleotide Sequence:NM_025391.2Link to Protein Sequence:NP_079667.2Re-query CCDS DB by Nucleotide ID:NM_025391Re-query CCDS DB by Protein ID:NP_079667Link to BLAST:NP_079667.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079667.2 180 Q9CXK8 180 100% 0 0

Chromosomal Locations for CCDS 22644.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 107056935 107056990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107057093 107057179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107057273 107057411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107058047 107058187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107058377 107058496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGAGGCCCTTGACTGAAGAAGAGACCCGGGTCATGTTTGAGAAGATCGCGAAGTACATCGGAGAGAACC
TTCAACTCCTAGTGGACAGACCCGACGGCACGTACTGTTTCCGGCTGCACAACGACCGAGTGTACTATGT
GAGTGAGATGATGCTGAAGCTGGCCGCCAACATCTCCGGAGACAAGCTCGTGTCGCTGGGGACGTGTTTT
GGGAAGTTTACCAAGACCCACAAGTTCCGCTTGCACGTGACAGCTCTGGATTACCTGGCCCCCTATGCCA
AGTATAAAGTGTGGGTAAAGCCGGGAGCAGAGCAGTCCTTCTTGTATGGAAACCATGTGTTGAAATCCGG
TCTGGGTCGAATTACTGAGAACACATCTCAGTACCAGGGAGTGGTTGTCTATTCCATGGCGGACATTCCT
CTGGGTTTTGGGGTGGCAGCAAAGTCTACCCAAGACTGCCGAAAAGTGGACCCCATGGCAATTGTGGTGT
TCCACCAAGCAGACATTGGGGAGTACGTACGCCATGAAGAGACACTGACTTAG

Translation (180 aa):
MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEMMLKLAANISGDKLVSLGTCF
GKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIP
LGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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