NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50955.1 Public Mus musculus 3 Dap3 23 108 98 CCDS HistoryNCBI Gene:65111Re-query CCDS DB by CCDS ID:50955.1Re-query CCDS DB by GeneID:65111See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50955.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107491.10 ENSMUSP00000103115.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107491.10Link to Ensembl Protein Viewer:ENSMUSP00000103115.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000107491Re-query CCDS DB by Protein ID:ENSMUSP00000103115
Original member Current member NCBI NM_001164533.1 NP_001158005.1 Accepted alive Link to Nucleotide Sequence:NM_001164533.1Link to Protein Sequence:NP_001158005.1Re-query CCDS DB by Nucleotide ID:NM_001164533Re-query CCDS DB by Protein ID:NP_001158005Link to BLAST:NP_001158005.1

Chromosomal Locations for CCDS 50955.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88923828 88923913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88925294 88925411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88927011 88927070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88928209 88928367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88928447 88928527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88929396 88929526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88930476 88930568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88930912 88931020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88933565 88933666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88936149 88936253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88942775 88942828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88949868 88949870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGAGAGCAAAGACCATGCTGACAGGAATAACAAGGCTTTTCTCCAGGGTCCAGAAGTTGGACCCGAGGT
GTTTTTTGCACATGAGTGTTCAAGCGACTCAGAACAGTCAGGTTCCAGCTGAGCGTCCCAGAACTGTTTC
CCGCACCAGTGACAGTGACCCGGCTAAGCATGGGGAGCAGCATGAGGGTCAGCACTACAGCATCCCCCTC
CAGGATCTGAAGACAGTGTTTCCTCACGGCCTGCCTCCTCGGTACATGATGCAGGTGAAGACTTTTGGCG
AAGCTTGTCTGATGGTCAGGAAGCCAGCTCTCGAGCTTCTGGGCTACCTGAAAAATACCAATTTTGCTCA
TCCAGCTGTGCGATATCTTCTTTATGGGGAGAAGGGGACAGGAAAGACCCTCAGTCTCTGCCATGCTGTT
CATTTTTGTGCAAGACATGACTGGCTGATTCTGCATATCCCAGATGCTCATCTTTGGGTAAAAAACTGCC
GGGAGCTTCTACAGTCCACTCACAACAAACAGCGCTTTGATCAACCCTTAGAGGCCTCTACCTGGCTGAA
GAATTTCAAAACTACCAATGAGCGCTTCCTGAGTCAGATAAAAGTTCAAGAGAAGTATGTTTGGAATAAG
AGAGAAAGCACTGAGAAAGGCAGTCCTCTGGGAGAAGTTGTTGAACAGGGCCTAACCCGAGTGAGGAATG
CCACTGACGCTGTTGGGGTCGTGCTGAAGGAGCTGAAGGCTCAGAGCGCCCTAGGGCTCTTTCACCTCCT
GGTGGCTGTGGATGGAGTCAATGCCCTCTGGGGAAGGACCACACTGAAAAAAGAAGATAGAACCTTGATT
GCCCCAGAGGAACTCTCCCTTGTCCACAATCTAAGGAAAATGGTGAAAAATGACTGGGAAGGATTTAATG
CCCTGGAGCCTTTTCTTCCCATCCTCATTCCCAACTATAATCCAAAGGAGTTTGAAAGTTCCTTCCAGTA
CTACTTAGAGAACAACTGGCTTCAACATGAGAAAGCTTCAACAGAAGAAGGGAGGAAGGAGCTGAGGTTC
CTGAGTAACTGCAACCCTGAGCAGCTGGAGCGGCTCTGTGCCTCGCTGTAA

Translation (366 aa):
MRAKTMLTGITRLFSRVQKLDPRCFLHMSVQATQNSQVPAERPRTVSRTSDSDPAKHGEQHEGQHYSIPL
QDLKTVFPHGLPPRYMMQVKTFGEACLMVRKPALELLGYLKNTNFAHPAVRYLLYGEKGTGKTLSLCHAV
HFCARHDWLILHIPDAHLWVKNCRELLQSTHNKQRFDQPLEASTWLKNFKTTNERFLSQIKVQEKYVWNK
RESTEKGSPLGEVVEQGLTRVRNATDAVGVVLKELKAQSALGLFHLLVAVDGVNALWGRTTLKKEDRTLI
APEELSLVHNLRKMVKNDWEGFNALEPFLPILIPNYNPKEFESSFQYYLENNWLQHEKASTEEGRKELRF
LSNCNPEQLERLCASL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH