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Report for CCDS49171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49171.1 Public Mus musculus 12 Wars1 23 108 98 CCDS HistoryNCBI Gene:22375Re-query CCDS DB by CCDS ID:49171.1Re-query CCDS DB by GeneID:22375See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49171.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109848.9 ENSMUSP00000105474.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109848.9Link to Ensembl Protein Viewer:ENSMUSP00000105474.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109848Re-query CCDS DB by Protein ID:ENSMUSP00000105474
Original member Current member EBI ENSMUST00000161410.7 ENSMUSP00000125320.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161410.7Link to Ensembl Protein Viewer:ENSMUSP00000125320.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161410Re-query CCDS DB by Protein ID:ENSMUSP00000125320
Original member NCBI NM_001164314.1 NP_001157786.1 Updated not alive Link to Nucleotide Sequence:NM_001164314.1Link to Protein Sequence:NP_001157786.1Re-query CCDS DB by Nucleotide ID:NM_001164314Re-query CCDS DB by Protein ID:NP_001157786
Current member NCBI NM_001164314.2 NP_001157786.1 Accepted alive Link to Nucleotide Sequence:NM_001164314.2Link to Protein Sequence:NP_001157786.1Re-query CCDS DB by Nucleotide ID:NM_001164314Re-query CCDS DB by Protein ID:NP_001157786Link to BLAST:NP_001157786.1
Original member NCBI NM_001164488.1 NP_001157960.1 Updated not alive Link to Nucleotide Sequence:NM_001164488.1Link to Protein Sequence:NP_001157960.1Re-query CCDS DB by Nucleotide ID:NM_001164488Re-query CCDS DB by Protein ID:NP_001157960
Current member NCBI NM_001164488.2 NP_001157960.1 Accepted alive Link to Nucleotide Sequence:NM_001164488.2Link to Protein Sequence:NP_001157960.1Re-query CCDS DB by Nucleotide ID:NM_001164488Re-query CCDS DB by Protein ID:NP_001157960Link to BLAST:NP_001157960.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157786.1 475 P32921-2 475 100% 0 0
NP_001157960.1 475 P32921-2 475 100% 0 0

Chromosomal Locations for CCDS 49171.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 108861265 108861426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108862803 108862943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108866013 108866299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108867677 108867777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108875114 108875296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108875666 108875785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108881043 108881151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108882695 108882908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108888376 108888486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGCAGACATGCCCAGTGGCGAGTCCTGCACCTCTCCACTGGAGCTGTTCAACAGCATAGCTACTCAAG
GGGAGCTCGTGAGGTCCCTCAAAGCTGGAAATGCACCAAAAGATGAGATTGATTCTGCAGTAAAGATGTT
GTTATCATTAAAAATGAGCTATAAGGCCGCCATGGGGGAGGAGTACAAGGCTGGCTGCCCTCCTGGGAAC
CCAACAGCTGGGAGAAATTGTGACTCTGATGCCACAAAAGCCAGCGAGGATTTTGTGGATCCATGGACGG
TGCGGACAAGCAGTGCAAAAGGCATCGACTATGACAAGCTCATTGTTCAGTTTGGAAGCAGCAAAATTGA
CAAAGAGCTGATAAACCGAATAGAGCGAGCCACTGGCCAAAGACCGCACCGCTTCCTGCGCCGGGGCATC
TTCTTCTCCCACCGAGATATGAATCAAATTCTGGATGCCTATGAAAATAAGAAGCCATTCTACCTGTACA
CAGGCAGGGGCCCCTCCTCCGAAGCAATGCATCTGGGTCATCTCGTCCCGTTTATTTTCACAAAGTGGCT
ACAGGATGTGTTCAATGTGCCTTTGGTCATCCAGATGTCTGACGACGAGAAGTACCTGTGGAAGGACTTG
ACTCTGGAGCAGGCATATAGCTACACCGTAGAAAATGCAAAGGACATCATTGCCTGTGGCTTCGACATCA
ACAAAACTTTCATCTTCTCTGATCTTGAGTATATGGGGCAGAGCCCGGGCTTCTACAGGAACGTGGTGAA
GATTCAGAAGCACGTCACCTTCAACCAAGTGAAAGGCATTTTCGGCTTTACGGACAGTGACTGCATCGGG
AAGATCAGTTTTCCTGCTGTCCAGGCCGCGCCATCGTTCAGCAACTCTTTCCCGAAGATCTTCCGAGACA
GGACAGATATCCAGTGCCTCATCCCGTGTGCCATTGACCAGGATCCGTACTTCAGAATGACAAGGGACGT
GGCCCCCAGGATCGGCCATCCTAAACCTGCCCTGCTGCACTCGACCTTCTTCCCTGCCCTGCAGGGCGCT
CAGACCAAGATGAGTGCCAGTGACCCCAACTCCTCCATCTTCCTCACTGACACGGCCAAGCAGATCAAGA
GCAAGGTCAACAAGCATGCATTTTCTGGAGGAAGAGATACTGTGGAGGAGCACAGGCAGTTTGGGGGCAA
CTGTGAAGTGGATGTATCCTTCATGTATCTGACCTTCTTCCTTGAAGATGACGACAGGCTGGAGCAGATC
AGAAAGGATTACACCAGCGGAGCCATGCTCACCGGGGAGCTCAAGAAGACGCTCATAGACGTCCTTCAGC
CCCTGATCGCAGAGCACCAGGCCCGACGCAAGGCGGTCACTGAGGAGACCGTGAAGGAGTTCATGACGCC
CCGGCAGCTGTCCTTCCACTTCCAGTAA

Translation (475 aa):
MADMPSGESCTSPLELFNSIATQGELVRSLKAGNAPKDEIDSAVKMLLSLKMSYKAAMGEEYKAGCPPGN
PTAGRNCDSDATKASEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELINRIERATGQRPHRFLRRGI
FFSHRDMNQILDAYENKKPFYLYTGRGPSSEAMHLGHLVPFIFTKWLQDVFNVPLVIQMSDDEKYLWKDL
TLEQAYSYTVENAKDIIACGFDINKTFIFSDLEYMGQSPGFYRNVVKIQKHVTFNQVKGIFGFTDSDCIG
KISFPAVQAAPSFSNSFPKIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGA
QTKMSASDPNSSIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQI
RKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMTPRQLSFHFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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