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Report for CCDS35127.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35127.2 Public Homo sapiens 9 OR1L1 24 110 108 CCDS HistoryNCBI Gene:26737Re-query CCDS DB by CCDS ID:35127.2Re-query CCDS DB by GeneID:26737See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 35127.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available protein data. This olfactory receptor (OR) gene lacks transcript support, possibly because OR genes are expressed in only a very small fraction of olfactory neurons, and thus, transcript evidence may be difficult to detect for all functional genes. The updated representation is consistent with that of The Human Olfactory Data Explorer (HORDE) database, entry #42-805.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35127.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309623.1 ENSP00000310773.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309623.1Link to Ensembl Protein Viewer:ENSP00000310773.1Re-query CCDS DB by Nucleotide ID:ENST00000309623Re-query CCDS DB by Protein ID:ENSP00000310773
Original member Current member NCBI NM_001005236.3 NP_001005236.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005236.3Link to Protein Sequence:NP_001005236.3Re-query CCDS DB by Nucleotide ID:NM_001005236Re-query CCDS DB by Protein ID:NP_001005236Link to BLAST:NP_001005236.3

Chromosomal Locations for CCDS 35127.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122661716 122662648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGGAAGAAATAACCTAACAAGACCCTCTGAATTCATCCTCCTTGGACTCTCCTCTCGACCTGAGGATC
AGAAGCCGCTCTTTGCTGTGTTCCTCCCCATCTACCTTATCACAGTGATAGGAAACCTGCTTATCATCCT
GGCCATCCGCTCAGACACTCGTCTCCAGACGCCCATGTACTTCTTTCTAAGCATCCTGTCTTTTGTTGAC
ATTTGCTATGTGACAGTCATTATCCCTAAGATGCTGGTGAACTTCTTATCAGAGACAAAGACCATCTCTT
ACAGTGAGTGTCTGACCCAGATGTACTTTTTCTTAGCCTTTGGAAACACAGACAGTTACCTGCTAGCAGC
CATGGCCATTGACCGCTATGTGGCCATATGTAATCCCTTCCACTACATCACCATTATGAGTCACAGATGC
TGTGTCCTGCTTCTGGTTCTCTCCTTCTGCATTCCACATTTTCACTCCCTCCTGCACATTCTTCTGACTA
ATCAGCTCATCTTCTGTGCCTCAAATGTCATCCATCACTTTTTCTGCGATGATCAACCAGTGCTAAAATT
GTCCTGTTCCTCCCATTTTGTCAAAGAAATCACAGTAATGACAGAAGGCTTGGCTGTCATAATGACCCCG
TTTTCATGCATCATCATCTCTTATTTAAGAATCCTCATCACTGTTCTGAAGATTCCTTCAGCTGCTGGAA
AGCGTAAAGCATTTTCTACCTGTGGCTCTCATCTCACAGTGGTGACCCTGTTTTATGGAAGCATTAGCTA
TCTCTATTTTCAGCCCCTGTCCAACTATACTGTCAAGGATCAAATAGCAACAATTATCTACACCGTACTG
ACTCCTATGCTAAATCCATTTATCTATAGTCTGAGGAACAAAGACATGAAGCAGGGTTTGGCAAAGTTGA
TGCACAGGATGAAATGTCAGTAA

Translation (310 aa):
MGRNNLTRPSEFILLGLSSRPEDQKPLFAVFLPIYLITVIGNLLIILAIRSDTRLQTPMYFFLSILSFVD
ICYVTVIIPKMLVNFLSETKTISYSECLTQMYFFLAFGNTDSYLLAAMAIDRYVAICNPFHYITIMSHRC
CVLLLVLSFCIPHFHSLLHILLTNQLIFCASNVIHHFFCDDQPVLKLSCSSHFVKEITVMTEGLAVIMTP
FSCIIISYLRILITVLKIPSAAGKRKAFSTCGSHLTVVTLFYGSISYLYFQPLSNYTVKDQIATIIYTVL
TPMLNPFIYSLRNKDMKQGLAKLMHRMKCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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