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Report for CCDS38033.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38033.1 Public Mus musculus 19 Rab11fip2 23 108 98 CCDS HistoryNCBI Gene:74998Re-query CCDS DB by CCDS ID:38033.1Re-query CCDS DB by GeneID:74998See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38033.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051996.12 ENSMUSP00000059978.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051996.12Link to Ensembl Protein Viewer:ENSMUSP00000059978.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051996Re-query CCDS DB by Protein ID:ENSMUSP00000059978
Original member Current member NCBI NM_001033172.3 NP_001028344.2 Accepted alive Link to Nucleotide Sequence:NM_001033172.3Link to Protein Sequence:NP_001028344.2Re-query CCDS DB by Nucleotide ID:NM_001033172Re-query CCDS DB by Protein ID:NP_001028344Link to BLAST:NP_001028344.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028344.2 529 G3XA57-2 529 100% 0 0

Chromosomal Locations for CCDS 38033.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 59906224 59906294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59906936 59907143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59913403 59913448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59935606 59936074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59936988 59937430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59942648 59943000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGATGCTGTCTGAGCAAGCCCAAAAGTGGTTTCCAACCCACGTGCAGGTCACAGTGCTCCAAGCTAAAG
ATCTGAAGCCAAAAGGCAAAAGTGGTACCAATGACACATACACCATAATTCAGTTGGGCAAAGAGAAGTA
TTCTACATCTGTAGCAGAGAAAACCCTGGAGCCGGTCTGGAAGGAGGAGGCCTCCTTTGAGCTGCCTGGG
TTGCTCATGCAGGGTAGTCCGGAGAAATACATTCTTTTTCTTATAGTGATGCACAGGTCCCTGGTGGGAC
TGGATAAGTTTTTAGGGCAGGTGGCAATCAATCTCAATGACATCTTTGAGGACAAACAAAGAAGGAAAAC
AGAGTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATT
CAATTTATGAGGAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTT
TTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCAT
CGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAA
CCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGT
CCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGA
TTCCTTTGGAGTTGTTCCAGAAAGTGGAAGTCTCAAGTCTCCACACAGACGAACACTAAGCTTTGATACT
TCTAAATTGAACCAACCTGGCAGCATTGTGGATGAAGGTGAACACTCTTTTGGAAGACAGAGTGACCCAT
TTACAAATGTGACTGCTTCATTACCCCAAAAATTTGCAACACTGCCAAGGAAGAAGAATCCATTTGAAGA
AAGCAGTGAGCCATGGGACAGCAGCATGAATTTATTCTCAAAACCAATTGAAGTCAGGAAAGAAAGTAAG
AGAGAGAAAAGGGAGAAGGTGAGCCTCTTTGAAAGAGTGACTGGCAAGAGAGATAGCAGGAGACCTGACA
AGCTGAACAATGGTGGATCTGATAGCCCATGTGACTTGAAATCACCTAGTGCTTTTAGTGAAAACCGGCA
GGACTATTTTGAATATGAGTCAACTAACCCGTTTACAGCAAAATTCAGGGCTTCAACTATAATGCCATCT
TCAAGTTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCGGACAACAATCCTTTCGATG
CCACGGCTGGGTACCGGAGTCTGACCTACGAAGAGGTGCTGCAGGAGCTGGTGAAGCACAAAGAACTCCT
TCGGAGGAAGGACACCCATATCCGGGAGCTAGAGGACTACATTGACAACCTCCTCGTCAGGGTGATGGAA
GAGACACCCAGCATCCTGCGAGTGCCCTACGAGCCATCCAGAAAAGCTGTATACACCCAGGACCACTTGT
CACCCGGGCCACCCCACCTCTGTGGAGAAGCTACTTCAACCCACTCCTGA

Translation (529 aa):
MMLSEQAQKWFPTHVQVTVLQAKDLKPKGKSGTNDTYTIIQLGKEKYSTSVAEKTLEPVWKEEASFELPG
LLMQGSPEKYILFLIVMHRSLVGLDKFLGQVAINLNDIFEDKQRRKTEWFRLESKQGKRIKNRGEIKVNI
QFMRNNMTASMFDLSMKDKTRSPFAKLKDKMKGRKSDGVFSDTSSAIVPSTHMPDANPEFSSGEMQMKSK
PKKPFLLGPQRLSSAHSMSDLTGSHLSSEKLKSSTVGPTHLLSRQIDSFGVVPESGSLKSPHRRTLSFDT
SKLNQPGSIVDEGEHSFGRQSDPFTNVTASLPQKFATLPRKKNPFEESSEPWDSSMNLFSKPIEVRKESK
REKREKVSLFERVTGKRDSRRPDKLNNGGSDSPCDLKSPSAFSENRQDYFEYESTNPFTAKFRASTIMPS
SSFHVNPTSSEDLRKIPDNNPFDATAGYRSLTYEEVLQELVKHKELLRRKDTHIRELEDYIDNLLVRVME
ETPSILRVPYEPSRKAVYTQDHLSPGPPHLCGEATSTHS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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