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Report for CCDS28063.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28063.1 Public Mus musculus 16 Ehhadh 23 108 98 CCDS HistoryNCBI Gene:74147Re-query CCDS DB by CCDS ID:28063.1Re-query CCDS DB by GeneID:74147See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28063.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023559.6 ENSMUSP00000023559.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023559.6Link to Ensembl Protein Viewer:ENSMUSP00000023559.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023559Re-query CCDS DB by Protein ID:ENSMUSP00000023559
Original member Current member NCBI NM_023737.3 NP_076226.2 Accepted alive Link to Nucleotide Sequence:NM_023737.3Link to Protein Sequence:NP_076226.2Re-query CCDS DB by Nucleotide ID:NM_023737Re-query CCDS DB by Protein ID:NP_076226Link to BLAST:NP_076226.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076226.2 718 Q9DBM2 718 100% 0 0

Chromosomal Locations for CCDS 28063.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 21762084 21763336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21766226 21766567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21770416 21770520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21773495 21773606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21775345 21775511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21777799 21777902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21787707 21787780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGGCTGAGTATCTGAGGCTGCCCCACTCCCTGGCTATGATCCGCCTCTGCAATCCACCGGTCAATGCCA
TCAGTCCAACTGTAATCACAGAAGTAAGGAATGGACTCCAGAAAGCTAGTTTGGACCATACGGTTAGAGC
CATAGTGATCTGTGGAGCAAATGACAACTTCTGTGCAGGTGCTGATATCCATGGCTTTAAATCTCCCACT
GGCCTTACATTAGGAAGCTTGGTAGATGAAATACAGCGATACCAGAAGCCAGTGGTGGCCGCCATCCAAG
GCGTGGCTCTTGGAGGAGGACTAGAGCTGGCCTTGGGCTGTCACTATCGGATTGCCAATGCAAAGGCTCG
TGTTGGCTTCCCGGAAGTGATGCTGGGAATTCTTCCTGGTGCAAGAGGAACGCAGCTTCTACCCAGGGTC
GTTGGAGTTCCTGTTGCTCTTGACTTAATTACCTCAGGAAGACATATTTCAACAGATGAAGCACTCAAGC
TTGGAATTCTGGATGTAGTTGTAAAGTCAGACCCAGTTGAAGAAGCCATCAAATTTGCTCAGACGGTTAT
AGGTAAACCCATAGAACCCCGCAGGATCCTAAACAAGCCAGTCCCAAGCTTGCCCAACATGGACAGTGTT
TTTGCAGAAGCCATTGCCAAGGTACGGAAGCAGTACCCTGGCCGCCTGGCTCCGGAGACTTGTGTCCGTT
CAGTCCAGGCCTCCGTGAAGCATCCATATGAAGTGGCCATCAAGGAAGAAGCAAAGCTGTTTATGTACCT
TCGGGGGTCGGGGCAGGCTAGAGCCCTGCAGTACGCCTTTTTTGCTGAAAAGTCTGCAAATAAGTGGTCA
ACTCCCTCAGGAGCATCTTGGAAAACAGCATCTGCTCAACCCGTCTCCTCGGTTGGTGTTCTTGGCTTGG
GAACGATGGGCCGAGGCATCGCCATCTCTTTTGCAAGGGTGGGGATCCCTGTGGTTGCTGTAGAGTCAGA
CCCAAAGCAGCTAGATACTGCAAAGAAGATAATAACTTCCACCTTGGAAAAGGAAGCATCGAAGAGTGGC
CAAGCTTCAGCAAAACCAAACCTCAGGTTCTCCTCATCCACAAAGGAGCTTTCGAGTGTGGATTTAGTGA
TTGAAGCAGTGTTCGAAGATATGAACCTGAAGAAGAAGGTCTTCGCTGAACTGTCAGCCCTGTGCAAGCC
GGGAGCCTTTCTGTGCACCAATACCTCAGCACTGGATGTGGATGACATTGCTTCTTCCACAGATCGCCCC
CAGCTGGTGATTGGCACCCACTTCTTCTCCCCAGCCCACATCATGAGGTTACTAGAGGTCATTCCTAGCC
GATACTCTTCCCCCACTACCATCGCCACAGTCATGAGCTTATCCAAAAGGATTGGAAAGATTGGAGTCGT
TGTTGGTAACTGCTATGGATTTGTTGGGAATCGAATGTTGGCTCCCTATTACAACCAGGGCTATTTCTTG
ATAGAGGAAGGTAGTAAGCCAGAGGATGTAGATGGGGTCTTAGAAGAGTTTGGTTTTAGAATGGGACCCT
TCAGGGTGTCTGACCTCGCAGGGCTAGATGTGGGTTGGAAAGTTCGCAAAGGGCAAGGCCTTACTGGACC
GTCCTTACCTCCAGGAACCCCCACCCGAAAGAGGGGCAATACCAGGTACTCCCCAATTGCTGATATGCTC
TGTGAAGCTGGGCGATTTGGTCAGAAGACAGGTAAGGGCTGGTATCAGTATGACAAGCCACTGGGTCGCA
TCCACAAACCTGATCCCTGGCTTTCTGAGTTTCTGTCACAGTATAGAGAAACCCATCACATCAAGCAGCG
CTCCATCAGCAAGGAGGAAATCCTGGAGCGTTGCTTATATTCCCTTATCAACGAGGCATTCCGCATCTTG
GAGGAGGGGATGGCCGCTAGCCCAGAGCACATTGATGTCATCTACTTGCATGGGTATGGGTGGCCAAGGC
ACGTGGGTGGGCCCATGTACTATGCTGCCTCAGTTGGGCTGCCCACAGTTCTAGAGAAATTGCAGAAATA
TTACAGACAGAATCCTGACATCCCCCAGCTGGAGCCCAGTGACTACCTGAGGAGGCTGGTTGCCCAGGGA
AGCCCTCCTCTGAAAGAATGGCAAAGCTTGGCAGGACCCCATAGCAGCAAACTGTGA

Translation (718 aa):
MAEYLRLPHSLAMIRLCNPPVNAISPTVITEVRNGLQKASLDHTVRAIVICGANDNFCAGADIHGFKSPT
GLTLGSLVDEIQRYQKPVVAAIQGVALGGGLELALGCHYRIANAKARVGFPEVMLGILPGARGTQLLPRV
VGVPVALDLITSGRHISTDEALKLGILDVVVKSDPVEEAIKFAQTVIGKPIEPRRILNKPVPSLPNMDSV
FAEAIAKVRKQYPGRLAPETCVRSVQASVKHPYEVAIKEEAKLFMYLRGSGQARALQYAFFAEKSANKWS
TPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGIPVVAVESDPKQLDTAKKIITSTLEKEASKSG
QASAKPNLRFSSSTKELSSVDLVIEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALDVDDIASSTDRP
QLVIGTHFFSPAHIMRLLEVIPSRYSSPTTIATVMSLSKRIGKIGVVVGNCYGFVGNRMLAPYYNQGYFL
IEEGSKPEDVDGVLEEFGFRMGPFRVSDLAGLDVGWKVRKGQGLTGPSLPPGTPTRKRGNTRYSPIADML
CEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSEFLSQYRETHHIKQRSISKEEILERCLYSLINEAFRIL
EEGMAASPEHIDVIYLHGYGWPRHVGGPMYYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG
SPPLKEWQSLAGPHSSKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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