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Report for CCDS35888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35888.1 Public Mus musculus 10 Mical1 23 108 98 CCDS HistoryNCBI Gene:171580Re-query CCDS DB by CCDS ID:35888.1Re-query CCDS DB by GeneID:171580See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 35888.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019967.15 ENSMUSP00000019967.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019967.15Link to Ensembl Protein Viewer:ENSMUSP00000019967.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000019967Re-query CCDS DB by Protein ID:ENSMUSP00000019967
Original member Current member NCBI NM_138315.2 NP_612188.1 Accepted alive Link to Nucleotide Sequence:NM_138315.2Link to Protein Sequence:NP_612188.1Re-query CCDS DB by Nucleotide ID:NM_138315Re-query CCDS DB by Protein ID:NP_612188Link to BLAST:NP_612188.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612188.1 1048 Q8VDP3-1 1048 100% 0 0

Chromosomal Locations for CCDS 35888.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 41478057 41478314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41478428 41478635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41478963 41479067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41479395 41479499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41479619 41479774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41480285 41480385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41481134 41481391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41481590 41481705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41481901 41482027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41482208 41482289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41482604 41482748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41483441 41483631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41483717 41483802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41484165 41484254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41484376 41484532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41484733 41484809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41484985 41485255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41485395 41485495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41485766 41485879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41486028 41486121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41486372 41486471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41486594 41486667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41486758 41486888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3147 nt):
ATGGCATCACCCGCCTCCACCAACCCAGCACATGACCACTTTGAGACCTTTGTGCAGGCACAGCTGTGCC
AGGATGTACTGAGTAGCTTTCAGGGGCTCTGTAGAGCCCTGGGAGTGGAGTCTGGTGGGGGATTGTCCCA
GTACCACAAGATCAAGGCCCAGCTCAACTACTGGAGTGCCAAGTCACTGTGGGCCAAGTTGGACAAGAGA
GCGAGCCAGCCTGTGTACCAGCAAGGCCAGGCCTGTACCAACACCAAGTGTCTCGTGGTAGGTGCCGGGC
CTTGCGGACTTCGGGCTGCTGTGGAGTTGGCACTGTTAGGTGCCCGAGTGGTACTTGTGGAAAAGCGTAT
CAAGTTCTCTAGGCACAATGTGCTCCATCTCTGGCCCTTCACCATCCATGACCTTCGGGCACTTGGGGCC
AAGAAGTTCTACGGGCGCTTCTGTACTGGCACCCTGGACCATATCAGCATCCGACAGCTTCAGCTGCTTC
TACTGAAGGTGGCCTTACTGTTGGGGGTGGAGATTCACTGGGGCGTCAAATTCACTGGCCTCCAGCCCCC
TCCCAGAAAAGGGAGTGGCTGGCGTGCTCAGCTCCAGCCCAACCCCCCAGCCCAACTGGCCAGCTATGAG
TTTGATGTCCTCATCTCAGCTGCAGGAGGCAAATTTGTCCCTGAAGGCTTCACTATACGAGAGATGCGTG
GCAAACTGGCCATTGGCATCACAGCCAACTTTGTGAATGGGCGCACGGTGGAGGAGACACAGGTGCCGGA
GATCAGTGGTGTAGCTCGAATCTACAACCAAAAATTCTTCCAGAGCCTGCTCAAAGCCACAGGTATTGAT
CTGGAGAACATTGTATACTACAAAGACGAGACCCACTACTTTGTGATGACAGCCAAGAAGCAGTGCCTGC
TGAGGCTGGGGGTGCTGCGCCAGGACTTGTCAGAGACTGATCAGCTGCTGGGCAAAGCTAATGTGGTACC
GGAGGCTCTGCAGCGCTTTGCCAGAGCAGCGGCTGACTTCGCCACACATGGCAAGCTTGGGAAACTGGAG
TTTGCTCAGGATGCACGCGGGCGGCCTGATGTGGCGGCCTTCGACTTCACAAGCATGATGCGGGCAGAGA
GTTCCGCTCGTGTCCAAGAAAAGCATGGTGCTCGCCTACTGCTGGGGCTGGTGGGGGACTGCCTAGTGGA
GCCCTTCTGGCCTCTGGGCACTGGAGTAGCCCGAGGCTTCTTGGCAGCCTTCGATGCAGCCTGGATGGTG
AAGCGGTGGGCAGAGGGCGCTGGGCCGCTAGAGGTGTTGGCTGAACGCGAGAGCTTGTACCAGCTTCTGT
CACAAACATCCCCCGAGAATATGCATCGAAATGTAGCCCAGTATGGGTTGGACCCTGCCACCCGATACCC
CAACCTGAACCTCCGGGCTGTAACCCCCAATCAGGTACAGGACCTCTATGATATGATGGACAAGGAGCAT
GCTCAGAGGAAGAGTGACGAGCCGGATTCCAGGAAGACAACCACAGGGTCCGCAGGCACGGAGGAGCTTC
TGCACTGGTGCCAGGAGCAGACAGCTGGCTTTCCTGGAGTCCATGTCACTGACTTTTCTTCCTCGTGGGC
TGATGGGCTAGCTCTGTGTGCCCTGGTACACCACCTACAGCCTGGCCTGCTGGAACCCTCGGAGCTGCAG
GGCATGGGAGCTCTAGAAGCCACTACCTGGGCACTGAGGGTGGCAGAACATGAGCTAGGCATCACACCAG
TGTTGTCTGCACAGGCAGTCATGGCTGGCAGTGACCCACTGGGTCTCATTGCCTACCTCAGCCACTTCCA
CAGTGCCTTCAAGAACACGAGCCACAGCTCAGGCCTTGTCAGCCAGCCCTCTGGAACCCCCAGTGCTATA
CTTTTCCTTGGCAAACTCCAGAGGAGCCTACAACGGACCCGCGCCAAGGTAGACGAGGAGACTCCGAGCA
CTGAGGAGCCGCCTGTCTCCGAGCCCAGTATGTCTCCAAACACTCCAGAGCTCTCTGAACACCAGGAGGC
TGGGGCAGAGGAGCTGTGTGAACTCTGTGGGAAACATCTGTACATCCTAGAACGCTTCTGTGTGGATGGC
CATTTCTTTCACCGGAGCTGCTTCTGCTGCCATACCTGTGAGGCCACATTGTGGCCAGGTGGCTATGGGC
AACATCCAGGAGATGGACATTTCTACTGTCTCCAGCACCTACCCCAGGAGGACCAAAAGGAGGCTGACAA
CAATGGAAGTCTGGAGAGCCAGGAGCTCCCAACACCAGGAGACAGCAACATGCAGCCAGACCCCTCCTCT
CCTCCTGTGACGAGGGTCAGCCCTGTCCCAAGCCCCAGCCAGCCTGCACGTCGGCTGATCCGGCTCTCCA
GTTTAGAACGCCTACGGCTGTCCTCCCTGAATATCATCCCTGACTCAGGAGCGGAGCCTCCTCCCAAACC
CCCAAGGAGCTGCTCAGACTTGGCCCGAGAATCCCTGAAGAGCAGCTTTGTGGGCTGGGGTGTGCCAGTC
CAAGCACCACAAGTTCCTGAAGCCATAGAGAAAGGGGATGATGAGGAGGAGGAAGAGGAAGAAGAGGAGG
AGGAGGAGGAGCCACTGCCACCTTTGGAGCCAGAGTTGGAGCAGACTCTGCTGACCTTGGCCAAGAACCC
AGGTGCCATGACTAAGTACCCAACGTGGCGTCGAACCCTCATGCGCCGTGCCAAAGAGGAGGAGATGAAG
AGGTTTTGCAAGGCCCAGGCCATCCAGCGAAGACTGAACGAGATTGAGGCCACTATGCGGGAGCTGGAGG
CCGAAGGCACGAAGCTGGAGCTGGCCTTGAGGAAAGAGAGTAGCTCTCCAGAACAGCAGAAGAAACTCTG
GCTGGATCAGCTGCTACGGCTCATTCAGAAGAAGAACAGCCTAGTGACTGAAGAGGCCGAGCTCATGATC
ACGGTGCAGGAGCTGGATCTGGAAGAGAAGCAGCGGCAGCTAGACCACGAGTTGCGGGGCTACATGAATC
GGGAAGAAACTATGAAGACAGAGGCCGACCTGCAGTCTGAGAACCAGGTCCTAAGGAAGCTGTTGGAGGT
GGTGAACCAGCGGGATGCTCTGATCCAATTCCAGGAGGAACGGAGGCTCAGAGAGATGCCTGCATAG

Translation (1048 aa):
MASPASTNPAHDHFETFVQAQLCQDVLSSFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKR
ASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGA
KKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYE
FDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVNGRTVEETQVPEISGVARIYNQKFFQSLLKATGID
LENIVYYKDETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANVVPEALQRFARAAADFATHGKLGKLE
FAQDARGRPDVAAFDFTSMMRAESSARVQEKHGARLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMV
KRWAEGAGPLEVLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQVQDLYDMMDKEH
AQRKSDEPDSRKTTTGSAGTEELLHWCQEQTAGFPGVHVTDFSSSWADGLALCALVHHLQPGLLEPSELQ
GMGALEATTWALRVAEHELGITPVLSAQAVMAGSDPLGLIAYLSHFHSAFKNTSHSSGLVSQPSGTPSAI
LFLGKLQRSLQRTRAKVDEETPSTEEPPVSEPSMSPNTPELSEHQEAGAEELCELCGKHLYILERFCVDG
HFFHRSCFCCHTCEATLWPGGYGQHPGDGHFYCLQHLPQEDQKEADNNGSLESQELPTPGDSNMQPDPSS
PPVTRVSPVPSPSQPARRLIRLSSLERLRLSSLNIIPDSGAEPPPKPPRSCSDLARESLKSSFVGWGVPV
QAPQVPEAIEKGDDEEEEEEEEEEEEEPLPPLEPELEQTLLTLAKNPGAMTKYPTWRRTLMRRAKEEEMK
RFCKAQAIQRRLNEIEATMRELEAEGTKLELALRKESSSPEQQKKLWLDQLLRLIQKKNSLVTEEAELMI
TVQELDLEEKQRQLDHELRGYMNREETMKTEADLQSENQVLRKLLEVVNQRDALIQFQEERRLREMPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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