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Report for CCDS49335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49335.1 Public Mus musculus 13 Cert1 23 108 98 CCDS HistoryNCBI Gene:68018Re-query CCDS DB by CCDS ID:49335.1Re-query CCDS DB by GeneID:68018See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49335.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109444.2 ENSMUSP00000105070.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109444.2Link to Ensembl Protein Viewer:ENSMUSP00000105070.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109444Re-query CCDS DB by Protein ID:ENSMUSP00000105070
Original member Current member EBI ENSMUST00000179226.7 ENSMUSP00000136766.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179226.7Link to Ensembl Protein Viewer:ENSMUSP00000136766.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179226Re-query CCDS DB by Protein ID:ENSMUSP00000136766
Original member Current member NCBI NM_001164222.1 NP_001157694.1 Accepted alive Link to Nucleotide Sequence:NM_001164222.1Link to Protein Sequence:NP_001157694.1Re-query CCDS DB by Nucleotide ID:NM_001164222Re-query CCDS DB by Protein ID:NP_001157694Link to BLAST:NP_001157694.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157694.1 598 Q9EQG9-2 598 100% 0 0

Chromosomal Locations for CCDS 49335.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 96543164 96543259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96549197 96549331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96571911 96572027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96598205 96598312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96599390 96599528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96603073 96603156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96609774 96609931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96612261 96612353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96614774 96614860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96616457 96616549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96624695 96624790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96629013 96629145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96630761 96630831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96634073 96634201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96634854 96634983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96635750 96635877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1797 nt):
ATGTCGGATAACCAGAGCTGGAACTCGTCGGGCTCGGAGGAGGATCCGGAGACGGAGTCCGGGCCGCCTG
TGGAGCGCTGCGGGGTCCTCAGCAAGTGGACAAACTATATTCATGGATGGCAGGATCGTTGGGTAGTTTT
GAAAAATAATACTTTGAGTTACTACAAATCTGAAGATGAAACAGAATATGGCTGTAGGGGATCCATCTGT
CTTAGCAAGGCTGTGATCACGCCTCACGATTTTGATGAATGCCGGTTTGATATCAGTGTAAATGATAGTG
TTTGGTACCTTCGAGCTCAGGACCCGGAGCACAGACAGCAATGGGTAGACGCCATTGAACAGCACAAGAC
TGAATCGGGATATGGATCTGAGTCCAGCTTGCGTAGACATGGCTCAATGGTGTCACTGGTGTCTGGAGCG
AGTGGCTATTCTGCTACGTCCACCTCTTCTTTCAAGAAAGGCCACAGTTTACGTGAGAAACTGGCTGAAA
TGGAGACATTTCGGGACATCCTGTGCCGGCAGGTTGATACTCTCCAGAAGTACTTTGATGTCTGTGCTGA
CGCTGTCTCCAAGGATGAGCTTCAGAGGGATAAAGTCGTAGAAGATGATGAAGATGACTTCCCTACAACT
CGTTCTGATGGAGACTTTTTGCACAATACCAATGGTAATAAAGAAAAATTATTTCCACATGTAACACCAA
AAGGAATTAATGGCATAGACTTTAAAGGGGAAGCAATAACTTTTAAAGCAACTACTGCTGGAATCCTTGC
TACACTTTCTCATTGTATTGAATTAATGGTAAAACGGGAAGAGAGCTGGCAAAAAAGACACGATAGGGAA
GTGGAAAAGAGGAGACGAGTGGAGGAAGCGTACAAGAATGTGATGGAAGAACTTAAGAAGAAACCCCGTT
TCGGAGGGCCGGATTATGAAGAAGGTCCAAACAGTCTGATTAATGAGGAAGAGTTCTTTGATGCTGTTGA
AGCTGCTCTTGACAGACAAGATAAAATAGAGGAACAGTCACAGAGTGAAAAGGTCAGGTTACACTGGCCC
ACATCATTGCCATCTGGAGACACCTTTTCTTCTGTCGGGACGCATAGATTTGTACAAAAGGTTGAAGAAA
TGGTACAGAACCACATGAACTATTCATTACAGGATGTAGGTGGTGATGCAAATTGGCAACTGGTTGTTGA
AGAAGGAGAAATGAAGGTATACAGAAGAGAAGTGGAAGAAAATGGAATTGTTCTGGATCCTTTGAAAGCT
ACTCATGCAGTTAAAGGTGTTACAGGACATGAGGTCTGCAATTACTTTTGGAATGTTGATGTTCGCAATG
ACTGGGAAACTACTATAGAAAACTTTCATGTGGTGGAAACATTAGCTGATAATGCAATCATCGTTTATCA
AACGCACAAGAGAGTATGGCCCGCTTCTCAGAGAGACGTACTGTATCTTTCTGCTATTCGAAAGATCCCA
GCCTTGACTGAAAATGATCCTGAAACTTGGATAGTTTGTAATTTTTCTGTGGATCATGATAGTGCTCCTC
TGAACAATCGATGTGTCCGTGCCAAAATCAATATTGCTATGATTTGTCAAACTTTAGTAAGCCCACCAGA
GGGAGACCAGGAGATAAGCAGAGACAACATTCTGTGCAAGATCACGTATGTAGCTAATGTGAACCCAGGA
GGATGGGCGCCAGCCTCGGTCTTAAGAGCAGTGGCAAAGCGAGAATACCCTAAGTTTCTAAAACGTTTTA
CTTCTTATGTCCAAGAAAAAACTGCAGGAAAACCAATTTTGTTTTAG

Translation (598 aa):
MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNTLSYYKSEDETEYGCRGSIC
LSKAVITPHDFDECRFDISVNDSVWYLRAQDPEHRQQWVDAIEQHKTESGYGSESSLRRHGSMVSLVSGA
SGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQKYFDVCADAVSKDELQRDKVVEDDEDDFPTT
RSDGDFLHNTNGNKEKLFPHVTPKGINGIDFKGEAITFKATTAGILATLSHCIELMVKREESWQKRHDRE
VEKRRRVEEAYKNVMEELKKKPRFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWP
TSLPSGDTFSSVGTHRFVQKVEEMVQNHMNYSLQDVGGDANWQLVVEEGEMKVYRREVEENGIVLDPLKA
THAVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIVYQTHKRVWPASQRDVLYLSAIRKIP
ALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINIAMICQTLVSPPEGDQEISRDNILCKITYVANVNPG
GWAPASVLRAVAKREYPKFLKRFTSYVQEKTAGKPILF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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