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Report for CCDS88788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88788.1 Public Mus musculus 15 Cpsf1 23 108 98 CCDS HistoryNCBI Gene:94230Re-query CCDS DB by CCDS ID:88788.1Re-query CCDS DB by GeneID:94230See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000230157.1 ENSMUSP00000155308.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230157.1Link to Ensembl Protein Viewer:ENSMUSP00000155308.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230157Re-query CCDS DB by Protein ID:ENSMUSP00000155308
Original member Current member NCBI NM_001164173.1 NP_001157645.1 Accepted alive Link to Nucleotide Sequence:NM_001164173.1Link to Protein Sequence:NP_001157645.1Re-query CCDS DB by Nucleotide ID:NM_001164173Re-query CCDS DB by Protein ID:NP_001157645Link to BLAST:NP_001157645.1

Chromosomal Locations for CCDS 88788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76595833 76595907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76596009 76596147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76596220 76596349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76596416 76596571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76596651 76596698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76596777 76596843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76596917 76597093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76597189 76597341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76597431 76597572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76597646 76597730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76597810 76597900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76597976 76598092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76598803 76598955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76599034 76599177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76599268 76599357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76599456 76599662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76599740 76599914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76599990 76600126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76600213 76600391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76600468 76600609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76600682 76600792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76600938 76601027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76601106 76601186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76601263 76601337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76601404 76601498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76601574 76601625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76601727 76601849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76601922 76602009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76602128 76602221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76602321 76602431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76602509 76602648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76602791 76602937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76603034 76603185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76603302 76603382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76603512 76603645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76603724 76603751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76607335 76607478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4353 nt):
ATGTACGCGGTGTACAAGCAGGCGCACCCGCCCACCGGGCTGGAGTTTACCATGTACTGCAACTTCTTCA
ACAACAGTGAGCGCAACCTCGTGGTGGCCGGCACCTCGCAGCTCTATGTGTACCGCCTGAACCGCGACGC
CGAGGCTCTGACCAAGAATGATGGGAGCACAGAGGGGAAGGCCCACCGAGAGAAACTAGAGCTGGTAGCC
TCCTTCTCTTTTTTTGGCAATGTCATGTCCATGGCCAGTGTGCAGCTTGCAGGCGCCAAACGTGATGCCT
TGCTTCTCAGTTTCAAAGACGCTAAGCTGTCTGTGGTGGAGTATGACCCAGGCACTCATGACCTGAAGAC
CCTGTCTCTACACTACTTTGAGGAGCCTGAACTTCGGGATGGGTTTGTGCAGAACGTGCATACGCCTCGT
GTGCGGGTGGACCCTGACGGGCGCTGTGCAGCAATGCTCATCTATGGCACGAGGCTGGTAGTTCTGCCTT
TCCGCAGAGAGAGCCTGGCTGAGGAACATGAGGGGCTCATGGGCGAAGGGCAGAGGTCTAGCTTCTTGCC
CAGCTACATCATTGATGTACGGGCTCTGGATGAGAAACTACTCAACATCATTGACCTGCAGTTCCTGCAT
GGCTACTATGAGCCCACCCTGCTTATCCTGTTTGAGCCCAACCAGACTTGGCCAGGGCGGGTGGCTGTGA
GGCAGGACACGTGCTCCATTGTGGCTATCTCGCTGAACATCACACAGAAAGTCCATCCAGTCATCTGGTC
CCTCACCAGCTTGCCTTTTGACTGTACCCAGGCCCTGGCTGTGCCCAAGCCCATAGGTGGGGTAGTGATC
TTCGCTGTCAACTCACTGTTGTACCTGAACCAGAGTGTTCCCCCATATGGTGTGGCTCTCAATAGTCTCA
CCACAGGCACCACCGCTTTCCCATTGCGTACCCAAGAGGGTGTACGGATCACCCTAGACTGCGCACAGGC
GGCCTTCATCTCTTATGACAAGATGGTCATCTCCCTCAAGGGTGGTGAGATTTATGTGCTGACCCTCATC
ACTGACGGCATGCGAAGTGTCCGAGCGTTTCACTTTGACAAGGCAGCTGCTAGTGTCCTTACCACCAGTA
TGGTCACAATGGAGCCCGGATACCTGTTCCTAGGCTCTCGCCTGGGCAATTCCCTCCTCCTCAAGTACAC
GGAGAAGCTGCAGGAGCCCCCAGCCAGCTCCGTCCGTGAGGCTGCTGACAAGGAAGAGCCACCCTCAAAG
AAGAAGCGAGTGGAGCCTGCAGTGGGCTGGACAGGAGGCAAGACGGTGCCACAGGACGAGGTGGATGAAA
TTGAAGTTTATGGCAGTGAGGCCCAGTCAGGCACACAGCTGGCTACTTACTCTTTTGAGGTATGTGACAG
CATGCTCAACATTGGACCCTGTGCCAACGCTGCTGTGGGCGAGCCTGCCTTCCTCTCTGAAGAGTTCCAG
AATAGCCCTGAGCCAGACCTGGAGATTGTGGTTTGTTCCGGCTACGGGAAGAATGGGGCCCTGTCAGTGT
TGCAGAAGAGTATCCGGCCCCAGGTGGTGACAACCTTTGAACTTCCTGGCTGCTATGATATGTGGACAGT
CATTGCTCCTGTGCGGAAAGAGGAGGAAGAAACCCCCAAAGCAGAGAGCACAGAGCAGGAGCCCAGTGCC
CCGAAAGCAGAGGAGGATGGGCGAAGACATGGCTTCCTTATTCTTAGCCGGGAAGACTCAACCATGATCC
TACAGACTGGCCAGGAGATCATGGAGCTGGACACCAGTGGTTTTGCCACTCAGGGTCCTACTGTCTTTGC
TGGAAACATTGGGGACAATCGTTACATTGTTCAAGTCTCGCCACTGGGCATTCGCCTGTTGGAAGGCGTG
AATCAATTGCACTTCATCCCTGTGGACCTGGGCGCCCCCATCGTGCAGTGTGCCGTGGCTGATCCCTATG
TGGTTATCATGAGTGCTGAGGGACACGTTACCATGTTCCTACTCAAGAGCGATTCCTATGGTGGCCGTCA
TCACCGCCTGGCACTACACAAGCCTCCACTGCATCATCAGTCCAAGGTGATTGCTCTCTGCCTGTACCGC
GATGTCAGTGGCATGTTCACCACTGAGAGCCGCCTGGGTGGGGCCCGTGATGAACTGGGTGGCCGAAGTG
GCTCCGAGGCAGAAGGCCTGGGCTCAGAAACGAGCCCCACAGTGGATGATGAGGAAGAGATGCTCTATGG
GGACTCCAGTGCCCTCTTCAGTCCCAGCAAAGAGGAGGCCCGTAGGAGCAGCCAGCCACCGGCTGATCGT
GACCCTGCACCCTTCAAGGCAGACCCCACTCACTGGTGCCTGCTGGTGCGGGAGAATGGCACCATGGAGA
TCTACCAGCTCCCAGACTGGCGGCTGGTATTCCTAGTTAAGAACTTCCCCGTGGGGCAGCGGGTTCTGGT
GGACAGTTCATTTGGACAGCCCACTACACAAGGTGAAGTCCGAAAGGAAGAAGCCACACGCCAGGGGGAG
CTGCCTTTGGTTAAGGAGGTGTTGTTGGTTGCTCTGGGAAGCCGGCAGAGCAGGCCCTACCTGCTGGTAC
ACGTGGACCAGGAGTTGCTTATCTATGAAGCCTTTCCCCATGACTCTCAGCTTGGCCAGGGAAATCTTAA
AGTCCGTTTCAAAAAGGTCCCTCACAATATCAACTTCCGTGAAAAGAAGCCAAAGCCGTCCAAGAAGAAG
GCCGAAGGTTGCAGCACTGAGGAGGGATCTGGAGGCCGGGGCCGTGTGGCACGTTTCCGCTACTTTGAGG
ATATTTATGGCTATTCGGGGGTTTTCATCTGTGGACCCTCACCTCACTGGCTCCTGGTGACTGGCCGCGG
AGCTCTGCGTCTGCACCCCATGGGCATTGATGGCCCCATTGACTCCTTTGCTCCTTTCCACAATGTGAAC
TGCCCCCGTGGTTTCCTGTACTTCAACAGACAGGGGGAGCTGAGGATCAGCGTCCTGCCTGCCTACCTGT
CCTACGATGCCCCATGGCCTGTCAGGAAGATCCCACTCCGATGCACAGCCCACTATGTGGCCTACCATGT
GGAATCCAAGGTCTATGCTGTGGCCACTAGTACCAACACACCTTGCACTAGGATCCCACGCATGACTGGC
GAGGAAAAAGAATTCGAGGCCATTGAGAGAGACGACAGATACATCCACCCCCAGCAAGAAGCCTTCTCCA
TCCAGCTCATCTCCCCGGTCAGCTGGGAGGCCATTCCCAATGCCAGGATCGAGCTAGAGGAATGGGAGCA
TGTCACGTGCATGAAGACAGTGTCACTGCGCAGTGAGGAGACCGTGTCAGGCCTAAAGGGCTATGTGGCT
GCTGGGACCTGCCTCATGCAGGGGGAGGAGGTCACGTGCCGTGGGCGGATCCTGATCATGGATGTGATTG
AAGTGGTGCCTGAGCCTGGGCAGCCCCTGACCAAGAACAAATTCAAGGTCCTGTATGAGAAGGAGCAGAA
AGGGCCCGTGACTGCGCTGTGCCACTGCAATGGCCACCTGGTGTCGGCCATTGGCCAAAAAATCTTCCTG
TGGAGCCTGCGGGCTAGCGAGCTGACCGGCATGGCCTTCATCGACACCCAGCTGTACATCCACCAGATGA
TCAGTGTCAAGAACTTCATCCTGGCAGCAGACGTCATGAAGAGCATCTCACTGCTGCGTTACCAAGAGGA
GAGCAAGACGCTGAGCCTGGTGTCCCGGGATGCCAAGCCTTTGGAGGTATACAGCGTGGACTTCATGGTG
GACAATGCCCAACTGGGCTTCTTGGTGTCTGACCGAGACCGCAATCTTATGGTGTATATGTATCTGCCAG
AAGCCAAAGAGAGTTTTGGGGGCATGCGCCTGCTACGCAGAGCGGATTTCCATGTGGGTGCCCACGTGAA
TACGTTCTGGAGGACCCCGTGCCGAGGTGCTGCCGAGGGCCCCAGCAAGAAGTCAGTCGTGTGGGAAAAC
AAGCATATCACATGGTTTGCAACCCTTGACGGTGGCATTGGGCTCCTGCTGCCCATGCAAGAAAAGACAT
ACCGACGCTTGCTGATGCTGCAGAATGCACTGACGACCATGCTACCCCACCACGCTGGCCTCAACCCCCG
CGCCTTCCGAATGTTGCACGTAGACCGGCGCATCTTGCAGAATGCTGTGCGCAACGTCCTTGATGGGGAA
CTGCTAAACCGCTACCTATACCTCAGCACCATGGAGCGCAGTGAGCTGGCCAAGAAGATAGGTACCACGC
CTGACATTACCGGGTCACGGCTCACTTCTAACTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTAC
CCATTTTGTATAA

Translation (1450 aa):
MYAVYKQAHPPTGLEFTMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDGSTEGKAHREKLELVA
SFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDGFVQNVHTPR
VRVDPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLMGEGQRSSFLPSYIIDVRALDEKLLNIIDLQFLH
GYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVI
FAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLI
TDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASSVREAADKEEPPSK
KKRVEPAVGWTGGKTVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSMLNIGPCANAAVGEPAFLSEEFQ
NSPEPDLEIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIAPVRKEEEETPKAESTEQEPSA
PKAEEDGRRHGFLILSREDSTMILQTGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGV
NQLHFIPVDLGAPIVQCAVADPYVVIMSAEGHVTMFLLKSDSYGGRHHRLALHKPPLHHQSKVIALCLYR
DVSGMFTTESRLGGARDELGGRSGSEAEGLGSETSPTVDDEEEMLYGDSSALFSPSKEEARRSSQPPADR
DPAPFKADPTHWCLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEVRKEEATRQGE
LPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPHNINFREKKPKPSKKK
AEGCSTEEGSGGRGRVARFRYFEDIYGYSGVFICGPSPHWLLVTGRGALRLHPMGIDGPIDSFAPFHNVN
CPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVESKVYAVATSTNTPCTRIPRMTG
EEKEFEAIERDDRYIHPQQEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVA
AGTCLMQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFL
WSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMV
DNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGAAEGPSKKSVVWEN
KHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRILQNAVRNVLDGE
LLNRYLYLSTMERSELAKKIGTTPDITGSRLTSNSRMLLWCCTLPSTHFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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