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Report for CCDS16971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16971.1 Public Mus musculus 2 Ndrg3 23 108 98 CCDS HistoryNCBI Gene:29812Re-query CCDS DB by CCDS ID:16971.1Re-query CCDS DB by GeneID:29812See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16971.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072298.12 ENSMUSP00000072144.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072298.12Link to Ensembl Protein Viewer:ENSMUSP00000072144.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072298Re-query CCDS DB by Protein ID:ENSMUSP00000072144
Original member Current member NCBI NM_001355392.1 NP_001342321.1 Accepted alive Link to Nucleotide Sequence:NM_001355392.1Link to Protein Sequence:NP_001342321.1Re-query CCDS DB by Nucleotide ID:NM_001355392Re-query CCDS DB by Protein ID:NP_001342321Link to BLAST:NP_001342321.1
Original member Current member NCBI NM_013865.2 NP_038893.1 Accepted alive Link to Nucleotide Sequence:NM_013865.2Link to Protein Sequence:NP_038893.1Re-query CCDS DB by Nucleotide ID:NM_013865Re-query CCDS DB by Protein ID:NP_038893Link to BLAST:NP_038893.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342321.1 375 Q9QYF9 375 100% 0 0
NP_038893.1 375 Q9QYF9 375 100% 0 0

Chromosomal Locations for CCDS 16971.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156928700 156928881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156931216 156931267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156931430 156931465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156934942 156934989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156937327 156937378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156937486 156937551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156938551 156938654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156940357 156940413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156943987 156944073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156944385 156944445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156946017 156946079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156948242 156948362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156950034 156950139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156958467 156958502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156970037 156970093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGGATGAACTTCAGGATGTTCAACTCACAGAGATCAAACCGCTTCTAAATGATAAGAATGGCACACGAA
ACTTCCAGGACTTTGACTGTCAGGAACATGACATTGAAACACCGCATGGTATGGTCCACGTCACCATAAG
AGGCTTACCAAAAGGAAACAGACCTGTTATCCTGACATACCACGACATTGGGCTCAACCATAAGTCCTGC
TTCAACACATTCTTCAACTTTGAGGATATGCAAGAGATCACCCAGCACTTTGCTGTCTGTCACGTGGACG
CTCCTGGCCAACAAGAAGCAGCACCCTCCTTCCCCACAGGGTACCAGTACCCCACCATGGATGAGCTAGC
TGAGATGCTGCCTCCTGTTCTCACACACTTAAGTATGAAGAGCATCATTGGTATTGGGGTTGGAGCAGGA
GCCTACATTCTCAGCAGATTTGCACTGAATCATCCAGAGCTGGTGGAAGGTCTTGTGCTCATTAACATTG
ACCCGTGTGCTAAGGGCTGGATTGACTGGGCAGCTTCCAAACTCTCAGGTTTTACCACCAACATTGTGGA
CATAATTCTGGCTCATCACTTTGGCCAGGAGGAGTTGCAGGCCAATTTGGACCTCATTCAAACCTACAGA
CTGCACATTGCTCAAGATATCAACCAAGAAAACCTCCAGCTCTTCCTGGGTTCCTATAATGGGCGCAGAG
ACCTGGAGATCGAAAGGCCTATACTGGGCCAAAATGATAACAGATTGAAAACGCTAAAGTGTTCTACCTT
ACTGGTGGTGGGGGACAATTCACCTGCTGTGGAGGCTGTGGTTGAATGTAATTCTCGCCTCGACCCTATA
AATACAACTTTGCTAAAGATGGCAGACTGTGGAGGACTGCCCCAAGTAGTTCAGCCTGGGAAGCTCACCG
AGGCCTTCAAGTACTTTTTGCAGGGAATGGGCTACATACCATCTGCCAGCATGACCCGGCTCGCCCGATC
ACGAACCCACTCCACCTCAAGTAGCATTGGCTCTGGAGAAAGTCCCTTTAGCAGGTCTGTGACCAGCAAT
CAGTCAGATGGAACTCAAGAATCCTGTGAGTCCCCTGATGTCCTGGACAGACACCAGACCATGGAAGTGT
CTTGCTAA

Translation (375 aa):
MDELQDVQLTEIKPLLNDKNGTRNFQDFDCQEHDIETPHGMVHVTIRGLPKGNRPVILTYHDIGLNHKSC
FNTFFNFEDMQEITQHFAVCHVDAPGQQEAAPSFPTGYQYPTMDELAEMLPPVLTHLSMKSIIGIGVGAG
AYILSRFALNHPELVEGLVLINIDPCAKGWIDWAASKLSGFTTNIVDIILAHHFGQEELQANLDLIQTYR
LHIAQDINQENLQLFLGSYNGRRDLEIERPILGQNDNRLKTLKCSTLLVVGDNSPAVEAVVECNSRLDPI
NTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIPSASMTRLARSRTHSTSSSIGSGESPFSRSVTSN
QSDGTQESCESPDVLDRHQTMEVSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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