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Report for CCDS40604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40604.1 Public Mus musculus 9 Atp5mg 23 108 98 CCDS HistoryNCBI Gene:27425Re-query CCDS DB by CCDS ID:40604.1Re-query CCDS DB by GeneID:27425See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40604.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043675.8 ENSMUSP00000047960.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043675.8Link to Ensembl Protein Viewer:ENSMUSP00000047960.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043675Re-query CCDS DB by Protein ID:ENSMUSP00000047960
Original member Current member NCBI NM_013795.5 NP_038823.2 Accepted alive Link to Nucleotide Sequence:NM_013795.5Link to Protein Sequence:NP_038823.2Re-query CCDS DB by Nucleotide ID:NM_013795Re-query CCDS DB by Protein ID:NP_038823Link to BLAST:NP_038823.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038823.2 103 Q9CPQ8 103 100% 0 0

Chromosomal Locations for CCDS 40604.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44913368 44913466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44914651 44914811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44920610 44920661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGGCCAAGTTCATCCGTAACTTCGCGGAGAAGGCACCGTCGATGGTAGCCGCTGCCGTGACTTACTCGA
AGCCTCGATTGGCCACATTTTGGCACTACGCCAAGGTTGAGCTGGTTCCCCCAACCCCTGCTGAAATCCC
TACAGCTATTCAGAGTGTGAAAAAAATCATTCAAAGTGCTAAAACTGGTAGCTTCAAACACCTTACAGTT
AAGGAAGCTGTGCTGAATGGTTTGGTGGCCACTGAGGTGTGGATGTGGTTTTATATCGGAGAGATCATAG
GCAAACGTGGCATTGTTGGCTATGATGTTTGA

Translation (103 aa):
MAKFIRNFAEKAPSMVAAAVTYSKPRLATFWHYAKVELVPPTPAEIPTAIQSVKKIIQSAKTGSFKHLTV
KEAVLNGLVATEVWMWFYIGEIIGKRGIVGYDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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