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Report for CCDS30185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30185.1 Public Mus musculus X Magea4 23 108 98 CCDS HistoryNCBI Gene:17140Re-query CCDS DB by CCDS ID:30185.1Re-query CCDS DB by GeneID:17140See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 30185.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048675.1 ENSMUSP00000046715.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048675.1Link to Ensembl Protein Viewer:ENSMUSP00000046715.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000048675Re-query CCDS DB by Protein ID:ENSMUSP00000046715
Original member NCBI NM_020280.2 NP_064676.2 Updated not alive Link to Nucleotide Sequence:NM_020280.2Link to Protein Sequence:NP_064676.2Re-query CCDS DB by Nucleotide ID:NM_020280Re-query CCDS DB by Protein ID:NP_064676
Current member NCBI NM_020280.3 NP_064676.2 Accepted alive Link to Nucleotide Sequence:NM_020280.3Link to Protein Sequence:NP_064676.2Re-query CCDS DB by Nucleotide ID:NM_020280Re-query CCDS DB by Protein ID:NP_064676Link to BLAST:NP_064676.2

Chromosomal Locations for CCDS 30185.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 72222017 72222964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGAAAATCCCGATAACACCCATTACTGCAGCCTCCAAGGCAGTGCTCGGAGCCAAAGGGAGTTAGACA
ATGTTCAGGCTACAATAGCTGTGGTAGATGAAGAGGAAGCCACTCCCACCTCAAAGAAGGTGTACAGTAG
TGGAATACCAAGTCCTCCCCAGAGTCCTCAAAGAGCCTCCTCTCCCCTTGTGATACTAGCCTCTGTTCCT
GAAGGCCCATCTGAGGAAGCTTCCACCAACCAAGTAGAGGAACAGGAAGACCCACTGTGCATGTTGTACA
ATGCACAGAACATAAAGTTATATGAATTGGCAACCTTTCTGTTTTTCAAATATCAAATGAAGGCATTTAC
TACCAAAGCAGAAATGCTGGAAAGTATTGGTAGAGAGTATGAGGAGTACTACCCTCTGATCTTTAGTGAG
GCCTCTGAGTGCTTTAAGCTGGTCTCTGGCATTGGCATGATAGAAGTGGACCCATTTGTCCAATCCTATA
TCCTTGTCCCTGCCCTGGGGCTCACCTATGATGGGATGCTGACTGATGTTCAGAGTAAGCCCAAGACAGG
TATCCTAATAGTTGTTCTTGGTGCTATTTTCACGCAAGGAAACTGTGTCAGTGAGGAGATTATCTGGAAA
ATGCTGAATAACATAGGGTTGTATGGTGGGAGGCATCTTTACATACATCAAGACCCCAGGAAGTTCATCT
CTGAGGAGTTTGTGCAGGAAGGGTACCTGGAATACAGGCAGGTGCCTAATAGTGATCCTCCAAGCTATGA
GTTTCTGTGGGACCCAAGGGCCTTTGCAGAAACCACCAAAATGAAAGTCTTGGAGATTTTTGCCAGCATT
ACTATGACCGATCCCAGAGCTTACACTGAAAAATACGCAGAGGCTTTGAGAGATGAGACAGAGAGGGCCC
AGGCCAGGATCATCCAGCAGATAGTTCTACAGCTCTGA

Translation (315 aa):
MENPDNTHYCSLQGSARSQRELDNVQATIAVVDEEEATPTSKKVYSSGIPSPPQSPQRASSPLVILASVP
EGPSEEASTNQVEEQEDPLCMLYNAQNIKLYELATFLFFKYQMKAFTTKAEMLESIGREYEEYYPLIFSE
ASECFKLVSGIGMIEVDPFVQSYILVPALGLTYDGMLTDVQSKPKTGILIVVLGAIFTQGNCVSEEIIWK
MLNNIGLYGGRHLYIHQDPRKFISEEFVQEGYLEYRQVPNSDPPSYEFLWDPRAFAETTKMKVLEIFASI
TMTDPRAYTEKYAEALRDETERAQARIIQQIVLQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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