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Report for CCDS37586.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37586.1 Public Mus musculus 17 Tsbp1 23 108 98 CCDS HistoryNCBI Gene:407788Re-query CCDS DB by CCDS ID:37586.1Re-query CCDS DB by GeneID:407788See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37586.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078615.11 ENSMUSP00000077685.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078615.11Link to Ensembl Protein Viewer:ENSMUSP00000077685.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078615Re-query CCDS DB by Protein ID:ENSMUSP00000077685
Original member Current member NCBI NM_001001177.2 NP_001001177.2 Accepted alive Link to Nucleotide Sequence:NM_001001177.2Link to Protein Sequence:NP_001001177.2Re-query CCDS DB by Nucleotide ID:NM_001001177Re-query CCDS DB by Protein ID:NP_001001177Link to BLAST:NP_001001177.2

Chromosomal Locations for CCDS 37586.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34417521 34417533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34418855 34418941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34419552 34419584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34421853 34421987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34440867 34440887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34443438 34443458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34444038 34444058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34445487 34445498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34446019 34446033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34446957 34446977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34448094 34448120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34448303 34448332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34448766 34448822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34449251 34449274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34449809 34449829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34451631 34451654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34452500 34452514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34459863 34460467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGCAGATCTCGAAATAGTTTTGGCTGTCATCCTGACTGTATTGGCCCTTGCTATTCTGACTATTCTGA
TAGCAAGATGGTCACGTCGTAGGAACAATGGGGCAGGGATGTCCAGATTCGCTTCAGAACAGAGTATTTC
CCATGGGAGACACAAAAGACGAGGTAAACAGTTTCGTTTCCTATGCAGGACTGGCAGTGTTATCAATGAG
GACCCTCACTGTGTCTCCTTTCCTTTAGGATCTCGTTGCTCGTTTTCATCAGATAGCGAACTGACTCAAA
AAACCTTCCTGCAAACTCCTGGACCTATTGTACAATGTATGGATTCCAGTGAAAGCTGCACCCCTGAGGG
ATCCAACGCTGTAATACCTGTGGACATATGTTGTCAACCAGCACTGAAGCCTAGCTGTTGTCAACAGCTA
GCAATCAAACCTAGCTGTTGTCAGCCTTGTCAGCCTTGTCAGCCTTGTCAGCCTTATCAACCTTGTCAGC
CTTCTCCGCCAGACACCTTGCCCTTATTAATTACACAGAGAACTTCAACAAAATGTGGACCACCTATAAT
ATTGAAAAAGCCATCAGATTGCAAAGGCCAGATGGTAAGACATGGAGGGAGTGTAACCTTCCAGGGTATC
GGAGATGACCAAATAAAGTGCTGTAAGGAGTGGAGAAGATGCCAGTGTGAATACTGCTGTCCAAAGAGAT
TCGAGCCCCACAGACGAGGAACCATATGGTGTGAACAACCAGCTCCTTCCTCTTCTCATCAGCATCAGCA
TCAGCAGCAGCAGCAGCAGCAGCCACCACCGCCGCCGCCTCCACCACGAAGTCAAGATGCTCAAGTAAGG
GGTGACCAAAGAATGGAAAGTGAAATTGATGCCCAGACCATATGTTATGAAGAGCCATTCCTTTTCAGAA
GACTGGAGTCCCTGATAAGGAGGAACCAAGACGGGATAGTAATAAAGCAGAATGAAGATGGCTTTCTGAT
AAAGAAGGCAGAGGAAGGCAAAAAGAAAAAGAAAACATCCAGGAGGGCATCAGCACACCCAGAAACAGAT
TCTGATTCCAGCGCTCCACAGACCGGAGAGGCTCCTTTCGAAAGTAAACCACCCGAAGAACAACCAGAGG
GAGAAGAGAAGAAACGCAAGAAAGAAAAGAAGAAAAAGAAGAAAAAAGACAAAGACGGCTGA

Translation (393 aa):
MADLEIVLAVILTVLALAILTILIARWSRRRNNGAGMSRFASEQSISHGRHKRRGKQFRFLCRTGSVINE
DPHCVSFPLGSRCSFSSDSELTQKTFLQTPGPIVQCMDSSESCTPEGSNAVIPVDICCQPALKPSCCQQL
AIKPSCCQPCQPCQPCQPYQPCQPSPPDTLPLLITQRTSTKCGPPIILKKPSDCKGQMVRHGGSVTFQGI
GDDQIKCCKEWRRCQCEYCCPKRFEPHRRGTIWCEQPAPSSSHQHQHQQQQQQQPPPPPPPPRSQDAQVR
GDQRMESEIDAQTICYEEPFLFRRLESLIRRNQDGIVIKQNEDGFLIKKAEEGKKKKKTSRRASAHPETD
SDSSAPQTGEAPFESKPPEEQPEGEEKKRKKEKKKKKKKDKDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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