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Report for CCDS28594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28594.1 Public Mus musculus 17 BC004004 23 108 98 CCDS HistoryNCBI Gene:80748Re-query CCDS DB by CCDS ID:28594.1Re-query CCDS DB by GeneID:80748See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28594.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064709.12 ENSMUSP00000066224.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064709.12Link to Ensembl Protein Viewer:ENSMUSP00000066224.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000064709Re-query CCDS DB by Protein ID:ENSMUSP00000066224
Original member Current member EBI ENSMUST00000149405.3 ENSMUSP00000117309.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149405.3Link to Ensembl Protein Viewer:ENSMUSP00000117309.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000149405Re-query CCDS DB by Protein ID:ENSMUSP00000117309
Original member Current member EBI ENSMUST00000234773.1 ENSMUSP00000157182.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234773.1Link to Ensembl Protein Viewer:ENSMUSP00000157182.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234773Re-query CCDS DB by Protein ID:ENSMUSP00000157182
Original member Current member EBI ENSMUST00000234711.1 ENSMUSP00000157208.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234711.1Link to Ensembl Protein Viewer:ENSMUSP00000157208.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234711Re-query CCDS DB by Protein ID:ENSMUSP00000157208
Original member Current member EBI ENSMUST00000235023.1 ENSMUSP00000157274.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235023.1Link to Ensembl Protein Viewer:ENSMUSP00000157274.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235023Re-query CCDS DB by Protein ID:ENSMUSP00000157274
Original member Current member EBI ENSMUST00000234256.1 ENSMUSP00000157363.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234256.1Link to Ensembl Protein Viewer:ENSMUSP00000157363.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234256Re-query CCDS DB by Protein ID:ENSMUSP00000157363
Original member Current member NCBI NM_030561.3 NP_085038.3 Accepted alive Link to Nucleotide Sequence:NM_030561.3Link to Protein Sequence:NP_085038.3Re-query CCDS DB by Nucleotide ID:NM_030561Re-query CCDS DB by Protein ID:NP_085038Link to BLAST:NP_085038.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085038.3 348 Q99KU6 348 100% 0 0

Chromosomal Locations for CCDS 28594.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29282079 29282267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29282678 29282891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29294007 29294161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29294275 29294414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29296560 29296689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29298642 29298765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29301356 29301450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGGATCTTGCTGCTAATGAGATCAGCATCTATGACAAACTTTCAGAGACTGTTGATTTGGTGAGACAGA
CAGGCCATCAGTGTGGAATGTCCGAGAAGGCAATCGAAAAATTTATCAGACAGCTACTGGAAAAGAATGA
ACCTCAAAGGGGACCACCCCAGTACCCTCTCCTTATAGCCGTGTATAAGGTCCTCCTAACTCTGGGATTA
ATCTTGTTCACTGCCTACTTTGTAATTCAGCCTTTTAGCTCATTAGCACCCGAGCCAGTGCTTTCTGGAG
CGAACAGCTGGCGCTCACTCGTTCATCACATTCGGCTGGTGTCCTTGCCCATTACCAAGAAGTATATGCC
AGAGAATAAGGGCGTTCCTCTGCAAGGGAGCCAGGAGGACAAACCCTTCCCAGACTTTGACCCCTGGTCA
TCATATAATTGTGAGCAGAACGAGTCAGAGCCCATCCCTGCCAACTGCACTGGCTGTGCCCAGATATTAC
CCCTCAAGGTAACGCTGCCAGAAGACACTCCAAAGAATTTTGAGAGACTCCGGCCTCTGGTGATCAAGAC
AGGACAGCCTCTGTCGTCTGCAGAGATTCAGAGCTTCTCATGCCAGTACCCTGAAGTCACAGAGGGCTTC
ACTGAGGGCTTTTTCACCAAGTGGTGGCGCTGCTTTCCTGAGAGGTGGTTCCCATTTCCTTACCCATGGA
GAAGACCTCTAAACAGATCACAGATTTTACGGGAACTTTTCCCTGTTTTTACCCAACTTCCATTTCCAAA
AGACTCCTCCTTAAACAAATGTTTCCTGATCCAGCCGGAACCTGTGGTGGGTAGCAAGATGCATAAGGTG
CATGACCTGTTCACCCTCGGCAGCGGGGAAGCCATGTTGCAGCTCATCCCTCCCTTCCAGTGCCGAACAC
ACTGTCAGTCCGTGGCCATGCCGATAGAGTCTGGAGATATTGGCTATGCCGATGCTGCCCACTGGAAGGT
CTACATTGTAGCCAGAGGGGTCCAGCCTTTGGTCATCTGCGATGGAACCACTCTCTCGGATCTGTAG

Translation (348 aa):
MDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLIAVYKVLLTLGL
ILFTAYFVIQPFSSLAPEPVLSGANSWRSLVHHIRLVSLPITKKYMPENKGVPLQGSQEDKPFPDFDPWS
SYNCEQNESEPIPANCTGCAQILPLKVTLPEDTPKNFERLRPLVIKTGQPLSSAEIQSFSCQYPEVTEGF
TEGFFTKWWRCFPERWFPFPYPWRRPLNRSQILRELFPVFTQLPFPKDSSLNKCFLIQPEPVVGSKMHKV
HDLFTLGSGEAMLQLIPPFQCRTHCQSVAMPIESGDIGYADAAHWKVYIVARGVQPLVICDGTTLSDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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