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Report for CCDS37289.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37289.1 Public Mus musculus 16 Alg3 23 108 98 CCDS HistoryNCBI Gene:208624Re-query CCDS DB by CCDS ID:37289.1Re-query CCDS DB by GeneID:208624See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37289.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045918.14 ENSMUSP00000045272.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045918.14Link to Ensembl Protein Viewer:ENSMUSP00000045272.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000045918Re-query CCDS DB by Protein ID:ENSMUSP00000045272
Original member Current member NCBI NM_145939.3 NP_666051.2 Accepted alive Link to Nucleotide Sequence:NM_145939.3Link to Protein Sequence:NP_666051.2Re-query CCDS DB by Nucleotide ID:NM_145939Re-query CCDS DB by Protein ID:NP_666051Link to BLAST:NP_666051.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666051.2 438 Q8K2A8 438 100% 0 0

Chromosomal Locations for CCDS 37289.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20605555 20605717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20605862 20606006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20606526 20606602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20606760 20606965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20607764 20607884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20608486 20608646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20608742 20608889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20608987 20609086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20610543 20610738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGGCTGCTGGGCTGCGGAAACGCGGCCAGCCGGCTTCTGTCGGCCAGCCGGCAGGAATCTGGAAACAAT
GGCTACAGCGTGCCTGGCAAGAACGCTACCTACTGCTGCGGGAACCGCGCTACACATTGCTGGTGGCCTC
CTGCCTCTGCATAGCAGAGGTGGGCATCACCTTCTGGGTCATTCACAGGGTGGCATACACAGAGATTGAC
TGGAAGGCCTACATGGCCCAGGTGGAGGGTTTCATCAATGGCACATATGACTACACACAGCTGCAGGGTG
ACACCGGACCTCTTGTCTACCCAGCTGGGTTTTTGTACATCTTTACGGGGCTATTCTATGCTACTGACCG
GGGCACTGATATCCCTATGGCCCAGAACATCTTTGCTGTACTCTACCTTGTCACCTTGGTGCTTGTTTTC
TTGATATACCACCAGACCTCCAAGGTACCTCCCTTCGTCTTTTTCTTCATGTGTTGTGCCTCTTACCGTG
TCCATTCCATCTTTGTACTGCGGCTCTTCAATGACCCAGTAGCTATGGCCTTGCTCTTCCTGAGCATCAA
CCTTTTCCTGGCACAGTGCTGGAGCTGGGGCTGCTGCTGTTTCAGCCTGGCTGTCTCGGTGAAGATGAAT
GTGCTGCTCTTCGCCCCGGGATTGCTATTCCTTCTTCTTACTCAGTTTGGCTTCCGTGGTGCCCTCCCCA
AGCTGGCCATCTGTGCTGCTCTTCAGGTGGTGCTGGGATTGCCCTTCCTGCTGGAGAACCCCATTGGCTA
CCTATCCCGCTCCTTTGACCTTGGTCGTCAGTTTCTTTTCCAATGGACAGTAAACTGGCGCTTCCTGCCT
GAAACCATCTTCCTGCATCGTGCCTTCCATCTAGCCCTGTTGGCTGCCCACCTTAGCCTCCTCTTGCTGT
TTGCCCTCTGTAGGTGGCACAGAACAGGGGAAAGTATTCTGGCACTGCTGAAGGATCCTTCCAAAAGGAA
AGTTCCACCCCAAGCCCTCACACCTAACCAGATTGTTTCCATCCTCTTCACCTCCAACTTCATTGGCATC
TGCTTTAGCCGCTCGCTCCACTACCAGTTTTATGTCTGGTATTTCCACACACTGCCCTACCTCCTGTGGG
CCATGCCTGCACGCTGGCTCACACACCTGCTCAGGTTGCTGGTGCTGGGACTCATTGAGCTCTCCTGGAA
TACGTACCCATCCACGTCCTTCAGCTCTGCCGCCCTCCACCTGTGCCACGCTGTCGTCCTGCTGCAGCTC
TGGCTGTCCCCCGAGTCCTTCCCTAAGAGCATTCAGCCAAGCAGGAAAACTCACTGA

Translation (438 aa):
MAAGLRKRGQPASVGQPAGIWKQWLQRAWQERYLLLREPRYTLLVASCLCIAEVGITFWVIHRVAYTEID
WKAYMAQVEGFINGTYDYTQLQGDTGPLVYPAGFLYIFTGLFYATDRGTDIPMAQNIFAVLYLVTLVLVF
LIYHQTSKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMALLFLSINLFLAQCWSWGCCCFSLAVSVKMN
VLLFAPGLLFLLLTQFGFRGALPKLAICAALQVVLGLPFLLENPIGYLSRSFDLGRQFLFQWTVNWRFLP
ETIFLHRAFHLALLAAHLSLLLLFALCRWHRTGESILALLKDPSKRKVPPQALTPNQIVSILFTSNFIGI
CFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSWNTYPSTSFSSAALHLCHAVVLLQL
WLSPESFPKSIQPSRKTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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