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Report for CCDS29005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29005.1 Public Mus musculus 17 Prepl 23 108 98 CCDS HistoryNCBI Gene:213760Re-query CCDS DB by CCDS ID:29005.1Re-query CCDS DB by GeneID:213760See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29005.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072406.4 ENSMUSP00000072239.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072406.4Link to Ensembl Protein Viewer:ENSMUSP00000072239.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000072406Re-query CCDS DB by Protein ID:ENSMUSP00000072239
Original member Current member NCBI NM_001163623.1 NP_001157095.1 Accepted alive Link to Nucleotide Sequence:NM_001163623.1Link to Protein Sequence:NP_001157095.1Re-query CCDS DB by Nucleotide ID:NM_001163623Re-query CCDS DB by Protein ID:NP_001157095Link to BLAST:NP_001157095.1
Original member Current member NCBI NM_001163624.1 NP_001157096.1 Accepted alive Link to Nucleotide Sequence:NM_001163624.1Link to Protein Sequence:NP_001157096.1Re-query CCDS DB by Nucleotide ID:NM_001163624Re-query CCDS DB by Protein ID:NP_001157096Link to BLAST:NP_001157096.1
Original member Current member NCBI NM_145984.3 NP_666096.3 Accepted alive Link to Nucleotide Sequence:NM_145984.3Link to Protein Sequence:NP_666096.3Re-query CCDS DB by Nucleotide ID:NM_145984Re-query CCDS DB by Protein ID:NP_666096Link to BLAST:NP_666096.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157095.1 638 Q8C167-2 638 100% 0 0
NP_001157096.1 638 Q8C167-2 638 100% 0 0
NP_666096.3 638 Q8C167-2 638 100% 0 0

Chromosomal Locations for CCDS 29005.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 85064644 85064733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85065042 85065115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85065632 85065755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85066148 85066297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85068885 85069101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85070428 85070603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85071912 85072109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85075866 85076051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85076609 85076825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85078489 85078624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85081064 85081270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85081972 85082038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85083193 85083267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGGATGCATTTGAAAAAGTGAGAACAAGACTGGAAACACAGCCACAGGAAGAGTACGAAGTCGTCAATG
CAGAGATTAAACATGGCGGCTTTGTTTATTATCAAGAAGGTTGCTGCTTGGTTCGTTCCAAAGACGAAGA
AGCTGACAGTGATAATTATGAAGTTTTATTCAACCTGGAAGAACTTAAATTGGATCAGCCTTTCATTGAT
TGCATCAGAGTTGCTCCTGATGAGAAATACGTGGCTGCCAAGATAAGGACGGAGGATTCTGAAACCTCCA
CCTTAGTAGTTGTGAAGCTCAGTGACCAGCCTGTAATGGAAGCGTCGTTCCCAAACGTGTCCAGTTTCGA
ATGGGTGAAGGATGAAGAAGATGAAGATGTCTTATTCTACACCTTCCAAAGGAACCTTCGCTGCCACGAT
GTGTATCGAGCCACATTTGGTGACAACAAGCGCAATGAACGGTTCTACACAGAGAAAGACCCAAGCTATT
TTGTCTTCCTCTACCTTACAAAAGACAGTCGTTTCCTCACACTGAATATTATGAACAAGACGACTTCCGA
GGTGTGGTTGATAGATGGCCTGAGCCCGTGGGACCCACCAGTCCTTATTCAGAAGAGGATACACGGAATG
CTTTACTATGTTGAGCATCGAGATGATGAGTTATACATCCTGACGAATGTTGGAGAACCTACAGAATTCA
AGCTGATGCGGACGGCAGCTGATGCCCCTGCTATTATGAATTGGGATTTATTTTTCACAATGAAGAGAAA
TACCAAGGTTGTAGACTTGGACATGTTTAAGGACCACTGTGTTCTGTTCCTGAAACACAGCAATCTCCTC
TATGTTAATGTGATTGGTCTGGCCGACGACTCAGTGCGCTCCCTAAAGCTCCCGCCTTGGGCCTGTGGAT
TCATAATGGATACAAATTCTGACCCAAAGAACTGCCCCTTTCAGCTTTGCTCTCCAATAAGACCCCCAAA
ATATTACACATACAAATTTGCAGAAGGCAAACTGTTTGAGGAAACTGGTCACGAAGATCCGATTACAAAG
ACCAGCCGTGTTTTACGCATAGAAGCCAAAAGCAAGGATGGAAAGTTAGTGCCCATGACAGTTTTTCACA
AAACCGATTCTGAGGACCTGCAGAGGAAGCCTCTCTTGGTGCACGTCTATGGAGCGTACGGAATGGACCT
GAAAATGAATTTCAGGCCTGAAAAGCGGGTCTTGGTGGATGATGGATGGATCTTAGCTTATTGCCATGTT
AGGGGTGGTGGCGAGCTAGGTCTCCAGTGGCATGCCGATGGCCGACTAACTAAAAAGCTCAATGGCCTTG
CTGACTTAGTGGCTTGCATTAAGACGCTTCACAGCCAGGGCTTTTCTCAGCCGAGCCTAACAACGCTGAG
CGCTTTCAGTGCTGGAGGTGTGCTCGTGGGAGCACTGTGTAATTCTAAGCCAGAGCTCCTGAGAGCCGTG
ACCCTGGAGGCACCTTTCTTGGATGTCCTCAATACCATGTTGGATACCACCCTTCCTCTGACACTGGAAG
AGTTGGAAGAGTGGGGGAACCCGTCATCTGATGAGAAACACAAGAACTACATAAAGCGCTACTGTCCCTG
CCAGAACATTAAGCCTCAGCATTATCCTTCAGTTCACATCACAGCCTATGAAAACGATGAGCGAGTGCCG
CTGAAAGGAATCGTGAACTACACAGAGAAGCTTAAGGAGGCCGTGGCTGAGCACACCAAGGGAGCGGGTG
AAGGCTATCAGCCCCCCAACATTATCCTAGATATTCAGCCTGGGGGGAACCACGTGATTGAGGATTCTCA
CAAAAAGATCACAACCCAGATGAAATTCCTATATGAGGAACTTGGACTTGACAGCACTGATGCTTTCGAG
GCGCTGAAGAAATACCTAAAGTTCTGA

Translation (638 aa):
MDAFEKVRTRLETQPQEEYEVVNAEIKHGGFVYYQEGCCLVRSKDEEADSDNYEVLFNLEELKLDQPFID
CIRVAPDEKYVAAKIRTEDSETSTLVVVKLSDQPVMEASFPNVSSFEWVKDEEDEDVLFYTFQRNLRCHD
VYRATFGDNKRNERFYTEKDPSYFVFLYLTKDSRFLTLNIMNKTTSEVWLIDGLSPWDPPVLIQKRIHGM
LYYVEHRDDELYILTNVGEPTEFKLMRTAADAPAIMNWDLFFTMKRNTKVVDLDMFKDHCVLFLKHSNLL
YVNVIGLADDSVRSLKLPPWACGFIMDTNSDPKNCPFQLCSPIRPPKYYTYKFAEGKLFEETGHEDPITK
TSRVLRIEAKSKDGKLVPMTVFHKTDSEDLQRKPLLVHVYGAYGMDLKMNFRPEKRVLVDDGWILAYCHV
RGGGELGLQWHADGRLTKKLNGLADLVACIKTLHSQGFSQPSLTTLSAFSAGGVLVGALCNSKPELLRAV
TLEAPFLDVLNTMLDTTLPLTLEELEEWGNPSSDEKHKNYIKRYCPCQNIKPQHYPSVHITAYENDERVP
LKGIVNYTEKLKEAVAEHTKGAGEGYQPPNIILDIQPGGNHVIEDSHKKITTQMKFLYEELGLDSTDAFE
ALKKYLKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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