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Report for CCDS18933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18933.1 Public Mus musculus 4 Fbxo6 23 108 98 CCDS HistoryNCBI Gene:50762Re-query CCDS DB by CCDS ID:18933.1Re-query CCDS DB by GeneID:50762See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18933.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030858.13 ENSMUSP00000030858.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030858.13Link to Ensembl Protein Viewer:ENSMUSP00000030858.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030858Re-query CCDS DB by Protein ID:ENSMUSP00000030858
Original member Current member EBI ENSMUST00000056965.11 ENSMUSP00000062348.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056965.11Link to Ensembl Protein Viewer:ENSMUSP00000062348.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000056965Re-query CCDS DB by Protein ID:ENSMUSP00000062348
Original member Current member EBI ENSMUST00000105706.7 ENSMUSP00000101331.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105706.7Link to Ensembl Protein Viewer:ENSMUSP00000101331.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105706Re-query CCDS DB by Protein ID:ENSMUSP00000101331
Original member Current member EBI ENSMUST00000168503.7 ENSMUSP00000130188.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168503.7Link to Ensembl Protein Viewer:ENSMUSP00000130188.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168503Re-query CCDS DB by Protein ID:ENSMUSP00000130188
Original member Current member NCBI NM_001163704.1 NP_001157176.1 Accepted alive Link to Nucleotide Sequence:NM_001163704.1Link to Protein Sequence:NP_001157176.1Re-query CCDS DB by Nucleotide ID:NM_001163704Re-query CCDS DB by Protein ID:NP_001157176Link to BLAST:NP_001157176.1
Original member Current member NCBI NM_001163705.1 NP_001157177.1 Accepted alive Link to Nucleotide Sequence:NM_001163705.1Link to Protein Sequence:NP_001157177.1Re-query CCDS DB by Nucleotide ID:NM_001163705Re-query CCDS DB by Protein ID:NP_001157177Link to BLAST:NP_001157177.1
Original member Current member NCBI NM_001163706.1 NP_001157178.1 Accepted alive Link to Nucleotide Sequence:NM_001163706.1Link to Protein Sequence:NP_001157178.1Re-query CCDS DB by Nucleotide ID:NM_001163706Re-query CCDS DB by Protein ID:NP_001157178Link to BLAST:NP_001157178.1
Original member Current member NCBI NM_001163707.1 NP_001157179.1 Accepted alive Link to Nucleotide Sequence:NM_001163707.1Link to Protein Sequence:NP_001157179.1Re-query CCDS DB by Nucleotide ID:NM_001163707Re-query CCDS DB by Protein ID:NP_001157179Link to BLAST:NP_001157179.1
Original member Current member NCBI NM_015797.4 NP_056612.1 Accepted alive Link to Nucleotide Sequence:NM_015797.4Link to Protein Sequence:NP_056612.1Re-query CCDS DB by Nucleotide ID:NM_015797Re-query CCDS DB by Protein ID:NP_056612Link to BLAST:NP_056612.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157176.1 295 Q9QZN4 295 100% 0 0
NP_001157177.1 295 Q9QZN4 295 100% 0 0
NP_001157178.1 295 Q9QZN4 295 100% 0 0
NP_001157179.1 295 Q9QZN4 295 100% 0 0
NP_056612.1 295 Q9QZN4 295 100% 0 0

Chromosomal Locations for CCDS 18933.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 148145916 148146185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148146321 148146456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148146840 148146935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148147295 148147421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148149379 148149637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGGTCCACATCAACGAGCTGCCAGAGAACATTCTCCTGGAGCTGTTCATCCATATCCCGGCCCCACAGC
TGCTGCGCAACTGCCGCCTGGTCTGCCGCCTCTGGCGAGACCTCATCGATGTGGTGTCCCTATGGAAGCG
CAAGAGTCTTCGAGAGGGCTTCTTCACCAAAGACCGGTGCGAGCCCGTGGAAGACTGGAAGGTCTTCTAT
ATCCTGTGCAGCCTGCAGAGGAACCTCCTTCGGAACCCGTGTGCTGAAGAGAACCTGAGCTCATGGCGGA
TAGACTCCAACGGAGGGGATCGCTGGAAGGTGGAGACGCTCCCTGGGAGCTGTGGCACAAGCTTTCCTGA
CAACAAGGTCAAGAAGTATTTTGTCACCTCTTTTGAGATGTGCCTCAAATCCCAGATGGTGGACCTCAAA
GCTGAGGGCTACTGCGAGGAGCTGATGGACACCTTTCGGCCTGACATTGTGGTTAAGGACTGGGTTGCCC
CCAGAGCAGACTGTGGCTGCACCTATCAACTCCGGGTACAGCTGGCCTCTGCGGACTACATTGTCTTGGC
CTCTTTTGAGCCTCCACCTGTGACATTCCAACAGTGGAATGATGCCAAATGGCAAGAGATTTCCCACACC
TTCTCTGATTACCCTCCAGGTGTCCGTCACATCCTTTTTCAACACGGGGGCCAGGACACTCAGTTCTGGA
AAGGCTGGTACGGCCCCCGTGTCACCAACAGCAGCATCATTATCAGCCACAGGACAGCCAAGAACCCTCC
CCCTGCCAGAACTCTACCGGAAGAAACTGTAGTAATCGGAAGGAGACGGCGAGCTTCGGACTCCAACACT
CATGAGGGTTTCTTCTGGCAAGGGCTATGGCAAAGGCTAAGGCGTTAG

Translation (295 aa):
MVHINELPENILLELFIHIPAPQLLRNCRLVCRLWRDLIDVVSLWKRKSLREGFFTKDRCEPVEDWKVFY
ILCSLQRNLLRNPCAEENLSSWRIDSNGGDRWKVETLPGSCGTSFPDNKVKKYFVTSFEMCLKSQMVDLK
AEGYCEELMDTFRPDIVVKDWVAPRADCGCTYQLRVQLASADYIVLASFEPPPVTFQQWNDAKWQEISHT
FSDYPPGVRHILFQHGGQDTQFWKGWYGPRVTNSSIIISHRTAKNPPPARTLPEETVVIGRRRRASDSNT
HEGFFWQGLWQRLRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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