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Report for CCDS29024.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29024.1 Public Mus musculus 17 Gtf2a1l 23 108 98 CCDS HistoryNCBI Gene:71828Re-query CCDS DB by CCDS ID:29024.1Re-query CCDS DB by GeneID:71828See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29024.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024970.10 ENSMUSP00000024970.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024970.10Link to Ensembl Protein Viewer:ENSMUSP00000024970.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000024970Re-query CCDS DB by Protein ID:ENSMUSP00000024970
Original member Current member NCBI NM_023630.2 NP_076119.2 Accepted alive Link to Nucleotide Sequence:NM_023630.2Link to Protein Sequence:NP_076119.2Re-query CCDS DB by Nucleotide ID:NM_023630Re-query CCDS DB by Protein ID:NP_076119Link to BLAST:NP_076119.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076119.2 468 Q8R4I4 468 100% 0 0

Chromosomal Locations for CCDS 29024.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 88668711 88668731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88671194 88671295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88671499 88671619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88689987 88690042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88691718 88691802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88694103 88694668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88711441 88711698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88712356 88712445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88714882 88714989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGCCTTCATCAACCTGGTGCCCAAACTCTACCAGTCTGTAATTGAAGATGTCATCGAGGGCGTGCGGG
ACCTGTTTGCTGAGGAAGGCATCGAGGAGCAGGTGTTGAAAGACCTGAAGAAGCTCTGGGAAACCAAAGT
GTTACAATCTAAAGCCACAGAGGACTTCTTCAGAAACAGCACGCAGGTGCCTCTTCTCACTCTCCAGCTG
CCTCATGCCTTACCACCAGCCCTGCAGCCCGAAGCATCGCTGCTGATCCCAGCTGGTAGAACTCTGCCGA
GTTTTACGCCGGAAGACCTGAACACCGCCAACTGTGGTGCAAACTTTGCCTTTGCTGGCTATCCGATCCA
CGTCCCAGCAGGCATGGCCTTCCAGACGGCATCTGGTCACCTTTACAAAGTCAATGTACCAGTCATGGTG
ACACAGACTTCTGGGAGAACAGAAATTCTCCAGCATCCATTTCAGCAAGTCCTTCAGCAGCTCGGGCAGC
CTTTAGTAATACAGACCACTGTTCCAACATTGCACCCATGTTCTCTTCAAGCAGCAACTGAGAAATCCCT
CAGAATGGAAGCTGTGCTGCAGCCACCTCCCATTCTGCATCCTCCTCCAGTGGACAGGACACATGTAGAA
AATGCTGCGAGCGACAGGCGCCTTCTCCCGGGAAATGAGCTGAGGCCGCAGGAAAGCTCTCCATACCTCA
GCCTTCCCGGTGTGGGCTTTCCTCCTCAGGCCGCTCTGACAGAGTCTAGCCTGGAGCCAGTGCTTGGTGT
CTCAGCGAGCCTGACTCAGAATCTGCACAGTGACCCTTTCTCACAGGGCCCCCCAGGCCCTCTCCACCAC
CACTTGCTAGAGTCACAGCTTCAAAGCCTTAAAGACAGTATATATGGATGCGACTCCACAAAGCAACTGA
GAAAAGCAGAGGAGCCCAGCAGCCTCCGTGTGTCAGAGAAGAATTGTACTTCAGAGAGGGATCTGAATAT
TCGGGTAACCGATGATGATATTAATGAAATAATCCAAATAGATGGAACCGGCGATAACTCTTCTACTGAA
GAGATGGGAAGTATAAGGGATGCAGATGAGAATGAATTCCCAGGGATCATTGATGCCGGCGACCTCAATG
TGCTTGAAGAAGTGGACAGCGTATCGAATGAAGATTCAACTGCAAATAGCAGCGACAACGAGGACCATCA
AATAAATGCCCCAGAAGAGGATCCCCTAAATTCTGGCGATGATGTCAGTGAGCAGGATGTGCCAGACCTG
TTTGATACAGAGAATGTAATTGTCTGTCAGTATGATAAGATCCACCGGAGCAAGAACAGATGGAAATTCT
ACTTGAAAGATGGTGTCATGTGCTTTGGAGGGAGAGACTACGTATTTGCCAAAGCCATTGGTGAAGCTGA
GTGGTAA

Translation (468 aa):
MAFINLVPKLYQSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWETKVLQSKATEDFFRNSTQVPLLTLQL
PHALPPALQPEASLLIPAGRTLPSFTPEDLNTANCGANFAFAGYPIHVPAGMAFQTASGHLYKVNVPVMV
TQTSGRTEILQHPFQQVLQQLGQPLVIQTTVPTLHPCSLQAATEKSLRMEAVLQPPPILHPPPVDRTHVE
NAASDRRLLPGNELRPQESSPYLSLPGVGFPPQAALTESSLEPVLGVSASLTQNLHSDPFSQGPPGPLHH
HLLESQLQSLKDSIYGCDSTKQLRKAEEPSSLRVSEKNCTSERDLNIRVTDDDINEIIQIDGTGDNSSTE
EMGSIRDADENEFPGIIDAGDLNVLEEVDSVSNEDSTANSSDNEDHQINAPEEDPLNSGDDVSEQDVPDL
FDTENVIVCQYDKIHRSKNRWKFYLKDGVMCFGGRDYVFAKAIGEAEW


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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