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Report for CCDS20442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20442.1 Public Mus musculus 6 Cand2 23 108 98 CCDS HistoryNCBI Gene:67088Re-query CCDS DB by CCDS ID:20442.1Re-query CCDS DB by GeneID:67088See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20442.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075995.6 ENSMUSP00000075377.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075995.6Link to Ensembl Protein Viewer:ENSMUSP00000075377.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000075995Re-query CCDS DB by Protein ID:ENSMUSP00000075377
Original member Current member NCBI NM_025958.2 NP_080234.2 Accepted alive Link to Nucleotide Sequence:NM_025958.2Link to Protein Sequence:NP_080234.2Re-query CCDS DB by Nucleotide ID:NM_025958Re-query CCDS DB by Protein ID:NP_080234Link to BLAST:NP_080234.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080234.2 1235 Q6ZQ73 1235 100% 0 0

Chromosomal Locations for CCDS 20442.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 115774611 115774678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115780847 115780990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115781608 115781762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115782737 115782860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115785106 115785371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115786876 115786981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115787130 115787269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115789439 115789731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115791192 115791333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115791669 115793171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115795776 115795871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115797870 115798039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115799860 115800024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115801849 115801956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115803637 115803864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3708 nt):
ATGAGTACCGGTGCCTTCTACATCTCCAGCCTGCTGGAGAAGATGACGTCCAGCGACAAAGACTTCAGGT
TCATGGCTACCAGTGACCTGATGTCAGAGTTGCAGAAAGACTCCATCCAGCTGGATGAGGACAGCGAGCG
TAAGGTGGTGAGGACGCTCCTGCGGCTCCTGGAGGACAGGAGTGGTGAGGTGCAGAACCTGGCTGTCAAG
TGCCTGGGTCCCCTGGTGGGCAAGGTGAAGGAGTACCAAGTGGAGAACATTGTGGACACCCTCTGTGCCA
ACATGCGGTCAGACAAGGAGCAGCTCCGGGACATCGCTGGCATTGGCCTGAAGACCGTGCTTTCAGAGCT
GCCTCCCGCCGCCACAGGCTCAGGGCTGGCTATCAATGTGTGTCGAAAGATCACAGGCCAACTCACCAGT
GCCATCGCCCAGCAGGAGGATGTGGCTGTGCAGCTGGAAGCCCTGGACATCCTCTCTGACATGCTGAGCA
GGCTAGGTGCCCCGTTGGGCACCTTCCATGCAAGCCTGCTGCACTGCCTATTGCCCCAGCTGAGCAGCCC
ACGCCTGGCTGTGCGCAAGCGCACTGTTGTCGCACTTGGTCATCTGGCAGCCGCCTGCAGCACTGACCTC
TTCGTGGAGCTTGCTGACCACCTGGTGGACCGGCTGCCTGGGCCACGGGCACCCGCCAGCCCTGCAGCCA
TTCGAACCCTGATCCAGTGCTTGGGCAGCGTGGGCCGTCAGGCAGGCCATCGCCTGGGGGCCCACCTGGA
CCGCCTGGTGCCCATGGTGGAGGAGTTCTGCAACCTGGATGACGATGAGCTAAGAGAGTCCTGCCTCCAG
GCCTTTGAGGCCTTCCTAAGAAAGTGCCCCAAGGAGATGGACCCTCACGTACCCAATGTGACCAGCCTCT
GCCTGCAGTACATGAAGCATGACCCCAACTATGACCATGACAGTGATGACGAAGAGCAGATGGAGACCGA
GGACAGTGAATTCAGTGAGCAAGAGAGTGAGGACGAGTACAGTGATGATGACGACATGAGCTGGAAGGTA
CGCCGAGCTGCGGCCAAGTGCATGGCAGCCCTCATCAGCTCTCGGCCCGACCTCCTGCCCGACTTCCACT
GCACTCTGGCACCTGCGCTCATCCGCCGCTTCAAGGAGCGGGAGGAGAACGTCAAGGCAGACATCTTCGG
GGCTTACATCATGTTGCTGCGACATACACGGCCCCCTAAAGGCTGGTTGGAGGCTGTGGAGGAGCCCACC
CAGACTGGCAGAAACCTCAATATGCTGCGAGCACAGGTGCCCCTAGTGATAAAGGCCCTGCAGCGACAAC
TTAAAGACCGGAATGTTCGGACCCGCCAAGGCTGCTTCAACCTCTTCACCGAGCTGGCAGGCGTCCTCCC
TGGCAGCCTGGCAGAGCACATGGCTGTGTTGGTGTCAGGCATTGTCTTTTCACTGGCCGACTACTCAAGC
TCCTCCACCATTCGGATGGATGCCCTGGCCTTCCTGCAGGGACTTCTGGGTACAGAGCCGGCTGAGGCCT
TCCATCCCCACTTGCCTACCCTCCTACCACCTGTGATGGCCTGTGTGGCTGACCCTTTCTACAAGGTGGC
AGCTGAGGCCTTACTGGTGCTCCAGGAGCTGGTGCGGACCCTGTGGCCACTGGATAGGCCTCGGCTGCTG
GACCCTGAACCATATGTCGGAGAGATGTCCACAGCTACCCTGGCACGACTCCGAGCCACTGACCTGGACC
AGGAGGTGAAGGAACGGGCCATCTCTTGTGTGGGCCACCTTGTGGGTCACCTTGGTGATCGACTTGGGGA
CGACCTAGAACCCACACTTATGCTTCTCCTGGATCGCCTACGGAATGAGATCACCCGGTTGCCTGCTGTC
AAGGCACTGACCCTGGTGGCCATGTCCCCATTGCGACTTGACCTGCAGCCCATCCTGGCTGAGGCCCTGC
CCATCCTGGCTTCATTTCTGCGCAAGAATCAGCGGGCCCTGCGGCTGGCCACACTGGCTGCTCTGGATGC
CCTGGCTCAGAGCCAGGGCCTCGGCCTGCCCCCGCCTGCCGTGCGGACTGTGCTAACCGAGCTGCCTGCT
CTGGTCAGCGAGAATGACATGCATGTGGCCCAGCTGGCTGTCGACTTCCTCACCACAGTGACCCAGACGC
AGCCCAGCTCTCTGGTTGAGGTCAGTGGCCCCGTTCTGGGGGAGCTGCTGCAGCTGCTGCACTCACCCTT
GCTGCCTGCCGGGGTGTTGGCAGCCACTGAAGGCTTCCTGCAGGCGCTGGTGGGAACCCGCCCTCCGTGT
GTGGAGTACTCGGAGCTCATTAGCCTGCTCACTGCACCTGTTTACAACCAGGTTGGGGACGGGGGACCCG
GCCTGCACAAGCAGGTGTTCCACTCGCTGGCCCGGTGTGTAGCTGCCCTCTCAGCTGCCTGCCCCCAGGA
GGCCGCAGGTACTGCCAGCCGCCTGGTTTGTGATGCCAAGTCGCCCCACTCAAGCACGGGGGTCAAAGTC
TTGGCATTCCTGTCACTGGCTGAGGTGGGCCAGGTGGCAGGGCCAGGCCCCCAGAGGGAGCTGAAGACCG
TGCTTCTGGAAGCCCTGGGGTCTCCCAGTGAGGACGTGAGGGCTGCAGCCGCATATGCCCTGGGCCGTGT
GGGTGCTGGCAACCTGCCTGACTTCCTGCCCTTCCTGCTGGCACAAATTGAGGCCCAGCCCCGGCGACAG
TACCTGCTGCTACATGCACTCAGGGAGGCCCTGGGGGCTGCGCAGCCTGACAATCTGAAGCCCTATGTTG
AGGATGTGTGGGCGCTGCTCTTCCAGCGCTGTGAGAGCCCCGAGGAAGGCACTCGGTGTGTGGTGGCGGA
GTGCATCGGGAAGCTAGTGTTTGTGAACCCTCCCTACCTCCTGCCTCGATTCCGGAAGCAGCTCGCTGCA
GGTCAGCCATACACCCGGAGCACGGTCATCACTGCAGTCAAGTTCCTCATCTCAGACCAGCCTCACTCCA
TCGACCCTCTCCTGAAGAGCTTCATTGCGGAGTTCATGGAAAGCCTGCAGGACCCAGACCTGAACGTGCG
CCGGGCCACACTCACCTTCTTCAACTCAGCTGTGCACAACAAACCATCACTGGTCCGGGACCTGTTGGAT
GACATCCTGCCCCTCCTCTACCAGGAGACCAAGATCCGCCGGGACCTCATCCGAGAGGTGGAGATGGGGC
CCTTCAAGCATACTGTGGATGATGGGCTGGATGTGAGGAAGGCTGCCTTCGAGTGCATGTACTCGCTGCT
GGAGAGCTGCCTGGGCCAGCTGGACATGTGCGAGTTTCTGAACCACGTGGAGGATGGGCTGAAGGACCAT
TATGACATCCGGATGCTGACCTTCATCATGTTGGCCCGACTGGCCACTCTTTGTCCTGCACCTGTCCTGC
AGAGGGTGGACCGGCTCATCGAGCCACTCAGAGCCACCTGTACTGCCAAGGTCAAGGCTGGTTCTGTGAA
GCAGGAGCTGGAGAAGCAGGAGGAGCTGAAGCGCTCAGCAATGCGGGCAGTGGCCGCCCTGCTGACCAAC
CCTGAGGTGCGCAAGAGCCCCACTGTAGCTGACTTTTCCGCCCAGATCCGATCCAACCCAGAACTCACCA
CCCTCTTCGAGAGCATCCAAAAGGACACAGCCTCCGGCCCCAGCACGGACTCTATGGAACTCAGCTAG

Translation (1235 aa):
MSTGAFYISSLLEKMTSSDKDFRFMATSDLMSELQKDSIQLDEDSERKVVRTLLRLLEDRSGEVQNLAVK
CLGPLVGKVKEYQVENIVDTLCANMRSDKEQLRDIAGIGLKTVLSELPPAATGSGLAINVCRKITGQLTS
AIAQQEDVAVQLEALDILSDMLSRLGAPLGTFHASLLHCLLPQLSSPRLAVRKRTVVALGHLAAACSTDL
FVELADHLVDRLPGPRAPASPAAIRTLIQCLGSVGRQAGHRLGAHLDRLVPMVEEFCNLDDDELRESCLQ
AFEAFLRKCPKEMDPHVPNVTSLCLQYMKHDPNYDHDSDDEEQMETEDSEFSEQESEDEYSDDDDMSWKV
RRAAAKCMAALISSRPDLLPDFHCTLAPALIRRFKEREENVKADIFGAYIMLLRHTRPPKGWLEAVEEPT
QTGRNLNMLRAQVPLVIKALQRQLKDRNVRTRQGCFNLFTELAGVLPGSLAEHMAVLVSGIVFSLADYSS
SSTIRMDALAFLQGLLGTEPAEAFHPHLPTLLPPVMACVADPFYKVAAEALLVLQELVRTLWPLDRPRLL
DPEPYVGEMSTATLARLRATDLDQEVKERAISCVGHLVGHLGDRLGDDLEPTLMLLLDRLRNEITRLPAV
KALTLVAMSPLRLDLQPILAEALPILASFLRKNQRALRLATLAALDALAQSQGLGLPPPAVRTVLTELPA
LVSENDMHVAQLAVDFLTTVTQTQPSSLVEVSGPVLGELLQLLHSPLLPAGVLAATEGFLQALVGTRPPC
VEYSELISLLTAPVYNQVGDGGPGLHKQVFHSLARCVAALSAACPQEAAGTASRLVCDAKSPHSSTGVKV
LAFLSLAEVGQVAGPGPQRELKTVLLEALGSPSEDVRAAAAYALGRVGAGNLPDFLPFLLAQIEAQPRRQ
YLLLHALREALGAAQPDNLKPYVEDVWALLFQRCESPEEGTRCVVAECIGKLVFVNPPYLLPRFRKQLAA
GQPYTRSTVITAVKFLISDQPHSIDPLLKSFIAEFMESLQDPDLNVRRATLTFFNSAVHNKPSLVRDLLD
DILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAAFECMYSLLESCLGQLDMCEFLNHVEDGLKDH
YDIRMLTFIMLARLATLCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQELEKQEELKRSAMRAVAALLTN
PEVRKSPTVADFSAQIRSNPELTTLFESIQKDTASGPSTDSMELS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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