NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16928.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16928.1 Public Mus musculus 2 Bpifb5 23 108 98 CCDS HistoryNCBI Gene:228802Re-query CCDS DB by CCDS ID:16928.1Re-query CCDS DB by GeneID:228802See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16928.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045959.7 ENSMUSP00000046683.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045959.7Link to Ensembl Protein Viewer:ENSMUSP00000046683.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045959Re-query CCDS DB by Protein ID:ENSMUSP00000046683
Original member Current member NCBI NM_144890.2 NP_659139.2 Accepted alive Link to Nucleotide Sequence:NM_144890.2Link to Protein Sequence:NP_659139.2Re-query CCDS DB by Nucleotide ID:NM_144890Re-query CCDS DB by Protein ID:NP_659139Link to BLAST:NP_659139.2

Chromosomal Locations for CCDS 16928.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 154223785 154223893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154224938 154225154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154227091 154227195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154228063 154228194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154228854 154228938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154229031 154229094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154229467 154229552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154230173 154230355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154232834 154232887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154233189 154233338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154234491 154234558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154234688 154234733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154236758 154236821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154238828 154238907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154240752 154240781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGCTGCTGCTGTGGGCACTGCTGTTATGCTGGGGGGTGCTGCCCCAAGCCCGAGGGGCAACCCACACTC
ATCTCTTCCTGCGGATCAACAATAGCCAGCTGGAAACAGACATCTCAAATCTATTATCAGAGAACCAGGT
CCTGGAGGGTATGATCAGGATGGCTGTGACTGGATCCCCAAGTGAGGGTGTGTCTGTCATGGACTCCCTG
CCCTTCGTCAGAGAGGAGCTCGTTGACAAGAAGAGTGGGCTGGATCTGTCATTGGTGGGGGACCTGCTCT
CTGGGAAGACTATGCCTGAGCTGAAGAAACTGCTGACGACAGCCGGGTTGGTCATAGAAGATGCCAAGGG
ACCAGAAGTCACCCTGCAAATTCTAAGTGACAGCCTGCTGCAGATCACACTGCGCTGCAAGCTGTACCTC
TCATTCCTAGAGATCCTCTGGCTGGAAGCCATCAAGAACATACGAATTGGAGTACGGCTAGAACAGATAG
GGAACAAGACCCAGGTGGCCTTCGAGGAGTGCCACACACCACCTGGAAGCCTGAACATCAAGATCCTGAA
GCGATCAGACACCCTGTTGCCAAACCAACTGCTGAAACTGGTGACCAACACCCTGGAGAAATCCCTGCCT
TTCCTCCTCCAGAAGATAGTGTGCCCTGTGGCCACAAACCTGATCAACTTCCTGCTGGAAGACATACTAC
ACATCATTCTTCCTCCCATCATCTCTGGTCCCGATGATTTCCAGTACTACGTGACCACCACAGAGTTCAC
AGAGGGAGCCATCCTGATGCGAGTGGCGCTTGTGACTCCCTGTGGCCCACACCAGCGGGCACCAAGGTCA
GAACACATGGTTCCCCCACCTCTCCCAGGATTATCCCAGAACAGCATGGCAGATCTTGCCTTTTGGCTAG
AAATCTACAATGACATCCTGGCCTGTCTCTACACCAGCCAGGAGATCTCTGTGGAGCCCCAGGACTCCTC
GGAAACTGACCTCTGGGAGCTGTTGTCCCTGAGCAGCCCGCAGTCCCAACCCAAGGCTTATAATCTGACC
CGAGGGAGCCTGGGCCTGATCATCAGCGCCCCAAACCCCCCCACCGTCCTCCTTGATGGCCGCAGGACCA
CGGTCACCCAGCAGGGCTTACTGATGCTGCATGGGACCAATGCCTCCTCTGATGCAGTTGCCTGGCAACT
CCTCTGCAGAGGCGAGTTCTCCTTAAGGAGTCAGAAACAGCAACTCCAGTTCGCACCACACGGCGCTGTG
GTCACCTTGGGCCCCTACCCCACTATCATTAAGGAGCAGGAAGAGCGCCTGAAGACCTTGCTCTTGGCTG
TCCTGAAGAGGTGGTTCCTGCCTCACCACAATGAGTGGCTCAGAGAGCATAGCCTCCCACTGCCCAACAT
CAAGGGCGTCTCCTTCAGCCTTGCCCAAATGGACTTCTCTGAGGATTACATCCTGCTGACCGTTCCGGAG
TAG

Translation (490 aa):
MLLLWALLLCWGVLPQARGATHTHLFLRINNSQLETDISNLLSENQVLEGMIRMAVTGSPSEGVSVMDSL
PFVREELVDKKSGLDLSLVGDLLSGKTMPELKKLLTTAGLVIEDAKGPEVTLQILSDSLLQITLRCKLYL
SFLEILWLEAIKNIRIGVRLEQIGNKTQVAFEECHTPPGSLNIKILKRSDTLLPNQLLKLVTNTLEKSLP
FLLQKIVCPVATNLINFLLEDILHIILPPIISGPDDFQYYVTTTEFTEGAILMRVALVTPCGPHQRAPRS
EHMVPPPLPGLSQNSMADLAFWLEIYNDILACLYTSQEISVEPQDSSETDLWELLSLSSPQSQPKAYNLT
RGSLGLIISAPNPPTVLLDGRRTTVTQQGLLMLHGTNASSDAVAWQLLCRGEFSLRSQKQQLQFAPHGAV
VTLGPYPTIIKEQEERLKTLLLAVLKRWFLPHHNEWLREHSLPLPNIKGVSFSLAQMDFSEDYILLTVPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH