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Report for CCDS17338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17338.1 Public Mus musculus 3 Mgarp 23 108 98 CCDS HistoryNCBI Gene:67749Re-query CCDS DB by CCDS ID:17338.1Re-query CCDS DB by GeneID:67749See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17338.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038154.11 ENSMUSP00000040703.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038154.11Link to Ensembl Protein Viewer:ENSMUSP00000040703.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038154Re-query CCDS DB by Protein ID:ENSMUSP00000040703
Original member Current member NCBI NM_026358.3 NP_080634.2 Accepted alive Link to Nucleotide Sequence:NM_026358.3Link to Protein Sequence:NP_080634.2Re-query CCDS DB by Nucleotide ID:NM_026358Re-query CCDS DB by Protein ID:NP_080634Link to BLAST:NP_080634.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080634.2 283 Q8VI64 283 100% 0 0

Chromosomal Locations for CCDS 17338.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51388752 51389323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51391226 51391319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51391825 51391928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51396427 51396508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGTATCTCCGCAGGGCTGTGTCCAAGACTCTGGCGCTGCCCCGGAGGGCGCCCCCGGGTCCCGCGCCGC
TGGGGAAGGACGCATCTCTTCGCCGAATGTCATCCAGGAAATTCCCTGGAACATCTGGCTCCAATATGAT
CTATTACCTGGTTGTAGGTGTGACAGTCAGTGCTGGTGGATATTACACTTACAAGGCTTTAACATCAAAG
CAAGTGAGACGTACAGAACATGTAGCTGAACCGAAAGAACAAACAAAGGCGGAGTTGCAACCACTTCCAG
GTGAAAAGGAAGAGCATGTGGCAGAAGCCGAGCAAGTGTGTTCAGAGCCTGGAGACACTGCTGTAACGGA
AGCTGAATCGGTAGATGCTGAGGAAGTCCCAGAGGCTGCAGTTGTGCTTCCAGAAGAGTCTCAGGCCTCC
GCCCCCTCCGAGGTCCCTGCCGAAGCTGCCGTGGTGGAGGCATCCTTATCGAGCTCAGAGCCTGAGCTGA
AGATAACCGAGGCTTCCCTGGTGGAGACTACCGAGAGTGTCCCTGAGTCTACTCAGGAGGTGGAGAGTGC
AGCCCCAGACCAGGATGACGTTTGCAATGAGGGGGCTGATACTAGCCAGGAGGGCGCTGATACCAGCCAG
GAGGGGGCTGATACCAGCCAGGAGGGCGCTGATACCACCAAGGAGGAGGCTGATAACAGCAAGGAGGCTG
AAGGTACCACTACTGAGGACCCGCGCTCGATCTCCGAGGAGAGTGCCGAACTAGAAGAAAGCCCTCCCTT
AGGCTCAGAACCCCCTGCCCAGCCTGAGTCACAAGAAGAAGAAACCCAGGTCACAGAGGAAACAGCATCA
CCCCAAGGTTGA

Translation (283 aa):
MYLRRAVSKTLALPRRAPPGPAPLGKDASLRRMSSRKFPGTSGSNMIYYLVVGVTVSAGGYYTYKALTSK
QVRRTEHVAEPKEQTKAELQPLPGEKEEHVAEAEQVCSEPGDTAVTEAESVDAEEVPEAAVVLPEESQAS
APSEVPAEAAVVEASLSSSEPELKITEASLVETTESVPESTQEVESAAPDQDDVCNEGADTSQEGADTSQ
EGADTSQEGADTTKEEADNSKEAEGTTTEDPRSISEESAELEESPPLGSEPPAQPESQEEETQVTEETAS
PQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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