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Report for CCDS50284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50284.1 Public Mus musculus 18 Lvrn 23 108 98 CCDS HistoryNCBI Gene:74574Re-query CCDS DB by CCDS ID:50284.1Re-query CCDS DB by GeneID:74574See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50284.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025358.3 ENSMUSP00000025358.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025358.3Link to Ensembl Protein Viewer:ENSMUSP00000025358.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000025358Re-query CCDS DB by Protein ID:ENSMUSP00000025358
Original member Current member NCBI NM_029008.1 NP_083284.1 Accepted alive Link to Nucleotide Sequence:NM_029008.1Link to Protein Sequence:NP_083284.1Re-query CCDS DB by Nucleotide ID:NM_029008Re-query CCDS DB by Protein ID:NP_083284Link to BLAST:NP_083284.1

Chromosomal Locations for CCDS 50284.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46850192 46850877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46864673 46864815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46866398 46866537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46873782 46873908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46876883 46877037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46878229 46878342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46880618 46880761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46881258 46881323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46881412 46881477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46882204 46882376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46884419 46884495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46885019 46885158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46887116 46887171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46889386 46889539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46890829 46890923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46893673 46893780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46894564 46894740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46894915 46895052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46900483 46900558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46905216 46905356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2976 nt):
ATGAGCCGTCCTTTCAGCTCCGGCGTCTATGTGAGCCGCGGGGTGGCCCTGCTGCTGGCCGCGCTGACAG
CC
GTGCTCCTGCTGGTGCTAGTGGCTCTGGCTTCCTTGTATGGCAGCTGCGCTCACGTCCAGCCTTCGGA
G
CAGGGTAACTCCCGGGTGAAGAACACCTCATTGTGGCCTCCCGGCGGCCAGGAGTGGGCGCTACCAACC
CCC
GCACAGGAGCCCACGGTGGGGACCTCCCAAGACTTGGGACCTCCGTCGGGGCCCTGGGATCATCTGC
GC
CTGCCTCCCTGGCTTGTCCCACTTCACTATGATCTGGAGCTGTGGCCCTGGCTGCAGCCGGATAAGCT
G
TCCCCACCGAATTTGACCTTCACGGGTCGCGTGAACATCACGGTACGCTGCACAGTGGCCTCCTCGAGA
TTG
TTGCTGCATAGCTTCCTTCTGAATTACAAGCAAGTGGAAGTGTGGGGTCCTCTGGCCCAGGACACTA
GG
AACGCCACTGTAGGCCGCGTGCAGGTGGAGAAAGTGTGGTTTGCGCCGGACATGCAATTCGTGGTGCT
G
GATCTGGGCCAATCCTTGGAGCCAGGTAGCAGATATGAGCTGAGTTTCCACTTCTCTGGCCAGGTGCTT
CAG
GTTGGCTTAGAAGGGCTCTTTCTGAACCTCTACCATGATGAAGATGAGCTCAGAGCCCTGGTAGCGA
CT
CAAATGGAGCCAACATTTGCCAGGCATGTTTTCCCTTGTTTTGATGAGCCAGCTCTAAAGGCAACTTT
T
AATATTACAGTTATCCATCATCCTGGGTATGCGGCTCTTTCCAATATGCCCCAGCTGGGTCAGTCTGAA
AGA
ATCGATGTGAATGGAAGCAGATGGACTGTCACTACCTTCCATACCACACCCCGCATGCCAACGTACC
TT
GTTGCCCTTGTTGTGTGTGACTTAGACCACATCAGCAGAACTGAGAGAGGCAAGGAGATACGTGTCTG
G
GCCCGGAAAGACGACATTGCAAGTGGATATTTAGACTTTGCTGCAAACATCACAGGCCCCATCTTCTCA
TTT
CTGGAGGATCTGTTTAATATCAGTTATCGGCTTCCAAAAACAGATATAGTTGCCTTGCCTATTTTTG
CC
AGCGGCGCCATGGAGAACTGGGGCCTGTTGATATTTGACGAATCGTCCCTGCTCCTGGAACCTGAGGA
T
GAGCTGACGGAGAAAAGAGCTATGATCTTGAGCATCATCGCCCATGAGGTTGGGCACCAGTGGTTTGGA
AAC
CTGGTGACCATGAGCTGGTGGAACAATATCTGGCTCAATGAAGGCTTTGCATCTTATTTTGAACTTG
AA
CTAACTAACTACTTCTATCCTAAAGTTCCCATGAATATGATCTTTTTTTTTACCGTTTTACATGGAAT
T
CTCGGAGAAGATCATGCCCTGGAGTCTAGAGCTGTGTCCACTGCAGTGGAAAATTTCACAGAAACAAGC
GAA
ATAAACAGACTCTTTGACTTATATACTTACAAGAAGGGAGCATGCATGGCCTGGATGCTTGCTAGTT
TC
CTGAGCCCGCACTTGTTTATCAACGCACTTAAGTCTTATTTGGAGACATTTTCTTACTCAAATGCTGA
G
CAAGATGACCTGTGGAGACATATTCAAATGGCTATAGGTGAGCAGAATGTAACTCATTTGCCAGCAACA
GTA
AAAGGCATAATGGACAGCTGGACACACCGGGGTGGCTTTCCTATCATCACAGTAAATGTGTCTACTG
GC
GTCGTTAAACAAGAGCCGTTTTATCTTGACAAGGTTGAAAATCAGACCCTTCTAAGCCACAATAGTAC
A
TGGATTGTCCCTATTTTTTGGATGAAAAATGGAATCCCACAACCTTTAGTCTGGCTAGATAAAAGCAAC
A
TG
ATGTTCCCTGGGATGAAACTTTCAGATTCTGACAGTGACTGGGTGATTTTAAACTTCAATGTGACTG
GA
TATTACAGAGTTAATTACGATGAGTTAGGCTGGAAGAAGTTAAGTGAGCAACTTGAAAAGGATCCTAA
G
GCCATTCCTGTCATTAACAGGCTGCAGCTGGTGAGCGACGCTTTCGCCTTGACTAAAAACAATTACATT
GAG
ATCGAGACGGCACTTGATTTAACCAAATACATTGCCGAAGAAGATGAGATCCTGGTGTGGTTTGAAG
TC
TTACTGAACTTGATAAACAGGGAAGTTATTTATGATGTGAACAACTATGCTTTATATCCACTATTGAA
G
AAGTATTTACTAAAGAGATTTAACTCAATATGGAATACTTATTCAGCTATAATTCGAGAAAATGTGGCA
TCA
TTACAAGACAATTATTTATCTCTATTTTCCCTGGAAAGGATTTTTGAAACTGCCTGTTGGTTGGGTC
TT
GAAGACTGTCTCCAGCTGTCCAGAGAACTCTTCAAAAAATGGACGGCTCATCCAGAGACAGCAATCCC
T
CCTCAGATTGAAAACGCGGTCCTCTGCAGTGCCGTTGCTCTGGGGAGTGATAAGGACTGGGACTTTTTG
TTT
AACCTTTACATCAATACGACCGAGGAAGAGGACGAGAGCCGCCGCCGCCGTCTTGTTCACGCAATGA
GC
TGCAGTAAAGACCCGTGGATACTTAACAGATTTATGGAGTATGCCATCACTGCAGTTTCCTCCAATTT
T
AGTGAAACAAATATAATAGTTGTTGTAGCAACATCTGAAGTTGGCCGGTACATTGCAAAGGACTTTCTA
ATG
GACAACTGGGTAGCTGTGACTGAAAGGTATGGAATGGATTGGCTGGATGCTCTAGTGCCTGTCTTAG
GG
AGGACCGTCAGTACAGATCAGCAGGTCACAGAGTTGCAGCACTTCTTCAGTACTGTGTTGGAAGAGCA
C
CAGAGGGTTGTGGTTCAAGCCAAATTACAGGCAATGAAGACGAAGAATCTGCAAAACAAGAAGAGAATT
GCC
AGGGTGGTTGAGTGGCTTCGGAAAAACACGTAA


Translation (991 aa):
MSRPFSSGVYVSRGVALLLAALTAVLLLVLVALASLYGSCAHVQPSEQGNSRVKNTSLWPPGGQEWALPT
P
AQEPTVGTSQDLGPPSGPWDHLRLPPWLVPLHYDLELWPWLQPDKLSPPNLTFTGRVNITVRCTVASSR
L
LLHSFLLNYKQVEVWGPLAQDTRNATVGRVQVEKVWFAPDMQFVVLDLGQSLEPGSRYELSFHFSGQVL
Q
VGLEGLFLNLYHDEDEL
RALVATQMEPTFARHVFPCFDEPALKATFNITVIHHPGYAALSNMPQLGQSE
R
IDVNGSRWTVTTFHTTPRMPTYLVALVVCDLDHISRTERGKE
IRVWARKDDIASGYLDFAANITGPIFS
F
LEDLFNISYRLPKT
DIVALPIFASGAMENWGLLIFDESSLLLEPEDELTEKRAMILSIIAHEVGHQWFG
N
LVTMSWWNNIWLNEGFASYFELELTNYFYPKVPM
NMIFFFTVLHGILGEDHALESRAVSTAVENFTETS
E
INRLFDLYTYKK
GACMAWMLASFLSPHLFINALKSYLETFSYSNAEQDDLWRHIQMAIGEQNVTHLPAT
V
KGIMDSWTHRGGFPIITVNVSTGVVKQEPFYLDKVENQTLLSH
NSTWIVPIFWMKNGIPQPLVWLDKSN
M
MFPGMKLSDSDSDWVILNFNVTGYYRVNYDELGWKKLSEQLEKDPKAIPVINRLQLVSDAFALTKNNYI
E
IETALDLTKYIAEEDEILVWFEVLLNLINREVIYDVNNYALYPLLK
KYLLKRFNSIWNTYSAIIRENVA
S
LQDNYLS
LFSLERIFETACWLGLEDCLQLSRELFKKWTAHPETAIPPQIENAVLCSAVALGSDKDWDFL
F
NLYINTTEEEDESRRRRLVHAMSCSKDPWILN
RFMEYAITAVSSNFSETNIIVVVATSEVGRYIAKDFL
M
DNWVAVTE
RYGMDWLDALVPVLGRTVSTDQQVTELQHFFSTVLEEHQRVVVQAKLQAMKTKNLQNKKRI
A
RVVEWLRKNT




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser