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Report for CCDS51575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51575.1 Public Mus musculus 5 1700016H13Rik 23 108 98 CCDS HistoryNCBI Gene:74218Re-query CCDS DB by CCDS ID:51575.1Re-query CCDS DB by GeneID:74218See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51575.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120688.5 ENSMUSP00000113469.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120688.5Link to Ensembl Protein Viewer:ENSMUSP00000113469.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120688Re-query CCDS DB by Protein ID:ENSMUSP00000113469
Original member Current member EBI ENSMUST00000119824.7 ENSMUSP00000113935.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119824.7Link to Ensembl Protein Viewer:ENSMUSP00000113935.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119824Re-query CCDS DB by Protein ID:ENSMUSP00000113935
Original member Current member EBI ENSMUST00000120108.7 ENSMUSP00000113969.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120108.7Link to Ensembl Protein Viewer:ENSMUSP00000113969.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120108Re-query CCDS DB by Protein ID:ENSMUSP00000113969
Original member Current member EBI ENSMUST00000134926.7 ENSMUSP00000114503.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134926.7Link to Ensembl Protein Viewer:ENSMUSP00000114503.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000134926Re-query CCDS DB by Protein ID:ENSMUSP00000114503
Original member Current member NCBI NM_001163550.1 NP_001157022.1 Accepted alive Link to Nucleotide Sequence:NM_001163550.1Link to Protein Sequence:NP_001157022.1Re-query CCDS DB by Nucleotide ID:NM_001163550Re-query CCDS DB by Protein ID:NP_001157022Link to BLAST:NP_001157022.1
Original member Current member NCBI NM_028824.1 NP_083100.1 Accepted alive Link to Nucleotide Sequence:NM_028824.1Link to Protein Sequence:NP_083100.1Re-query CCDS DB by Nucleotide ID:NM_028824Re-query CCDS DB by Protein ID:NP_083100Link to BLAST:NP_083100.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157022.1 117 Q9DAA3 117 100% 0 0
NP_083100.1 117 Q9DAA3 117 100% 0 0

Chromosomal Locations for CCDS 51575.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 103648821 103648954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103649422 103649576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103654922 103654986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGGCGTATGGCTTGCCAAGAAGGAACACAGTACAAACCATTTTGAAGGGCAGCTGTTATAAAGTACAGG
AGCCATGGGACCTTGCGGAACTCACAAAGACCTGGTACACAAACTTGACGAACATCAGGCTGCCATTCTT
GGGAGAAATCGTATTTGGTAGTCCTATGAATCTCTTGGCAAGCCAAACCAAACAGGAATGCCAGTTTCCT
TCAATGCAATCCATGGCACTTGAAAAGGAGTATGAAGCAAAGCGCCTAACAAAACTGAAGTGTCAGGAGA
ATGTGTGTAAGGAAATCCAGGCTTCACTGAGAGAAAAGAAAGTCGGCCTGAGAAGACCACTTCAGCCCAA
GTGA

Translation (117 aa):
MAYGLPRRNTVQTILKGSCYKVQEPWDLAELTKTWYTNLTNIRLPFLGEIVFGSPMNLLASQTKQECQFP
SMQSMALEKEYEAKRLTKLKCQENVCKEIQASLREKKVGLRRPLQPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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