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Report for CCDS52605.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52605.1 Public Mus musculus 8 1700011L22Rik 23 108 98 CCDS HistoryNCBI Gene:67687Re-query CCDS DB by CCDS ID:52605.1Re-query CCDS DB by GeneID:67687See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52605.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034109.5 ENSMUSP00000034109.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034109.5Link to Ensembl Protein Viewer:ENSMUSP00000034109.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034109Re-query CCDS DB by Protein ID:ENSMUSP00000034109
Original member Current member NCBI NM_026315.1 NP_080591.1 Accepted alive Link to Nucleotide Sequence:NM_026315.1Link to Protein Sequence:NP_080591.1Re-query CCDS DB by Nucleotide ID:NM_026315Re-query CCDS DB by Protein ID:NP_080591Link to BLAST:NP_080591.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080591.1 208 Q9DAF8 208 100% 0 0

Chromosomal Locations for CCDS 52605.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 79210650 79210757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79213478 79213551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79214893 79214965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79220244 79220305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79229317 79229393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79248220 79248452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGACACACTTCTTGTACTTGACTCCAGAAATCCTGCTTCCCTTTAGCCCTCTCACTTCTACAGAGTTCG
AACTGATCAGACGCAAGGCCCAACAACTGTGGCAGGATGAGACACGGTGGTCTGCTTCTTCCATGACAAC
CTACTCAGGGAGTTACCGGGAAAAGCAACTGGACGAGGCCACCTGCAACCGGCTGGCCCAGAGAGTAGGC
CAGCCGCAGTTTGAGTACAAACCAACACCATTGCCAGGCAGCTCTGCCTACAACACTCTACCCGGCCACG
CTGGTTCCCAAGAGGCTGCAGATGGCAAAGGAAGACTCCCTGATATAGCAAGCCCCTCCAGGGACAGCCC
ACTGAACATCAAGCACAAAGTGGCACATCAGATTTGGGGTTCTGAAGTCCCTTGTCCAACATTTCTAGCT
TACAGAGGTCTCCGTATGTCCCCCTGTATGCAGCCCAAAAAGCCAGGCTTTGAGCTCCTCATGAGTTACA
GGAACAGAGGGAAGGCCCTGCTGAAACGGCTTCAGCGACAATGGGATTATGAAAGCAAGTTGGGCTCCTC
GGAGGACTCAGGGACGGATCGATTCTCCTCCAATACCAGTGGAAGCTCAGGGCGCAAATTCAAGTGA

Translation (208 aa):
MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVG
QPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLA
YRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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