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Report for CCDS51615.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51615.1 Public Mus musculus 5 Ccdc121rt3 23 108 98 CCDS HistoryNCBI Gene:625424Re-query CCDS DB by CCDS ID:51615.1Re-query CCDS DB by GeneID:625424See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51615.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051117.2 ENSMUSP00000049839.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051117.2Link to Ensembl Protein Viewer:ENSMUSP00000049839.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000051117Re-query CCDS DB by Protein ID:ENSMUSP00000049839
Original member Current member NCBI NM_001039228.4 NP_001034317.2 Accepted alive Link to Nucleotide Sequence:NM_001039228.4Link to Protein Sequence:NP_001034317.2Re-query CCDS DB by Nucleotide ID:NM_001039228Re-query CCDS DB by Protein ID:NP_001034317Link to BLAST:NP_001034317.2

Chromosomal Locations for CCDS 51615.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 112354427 112355836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGAGTCCCAAGGAAGTAGGCGAGGTACCCTTTACCCTCAGAGACAGGGAAGTGGAGCTACTCTTTTGC
CCAACAGACAAAAAGGCGGGACTGCTGAACCACCATTACTTCCTGCAAAGGATGAGACAGTTCGGATACG
TGAAGACTTCTCTTACAGAGCTACCCTGGCCAGGAAAAAGGCCATACATGACTTCCGGGTGAGGTGGCCA
GAACTGATTCTCCTGGAAAGGAAGAAAAAGGAGGAACTCCCCGTACTTGGCCAAAGCTCATCTGACTTCC
TCCCTGTTGCCAGCAGCTGCTCTTCAATGGTCAGCATCATCAACACAGACCTGGACAGCACTCCCAGTGA
GCTCCTGGATTCTAAAGTATTGGCTGCTGACTCCCAAGCCCCTCCTTTACAGACTCCACATATGACCATT
CTCAACAGCTATCTGAAGCCAGAGTCTCTGACACGGCTGGAGAAGAGGGTGAGGAGGAAGACCCTGGCAG
CCATGGCTGAGCTGGAGCAGGACATGGAAGCGGTTAAGAGACGACAGTCAGTGCTCATAAGGGACATCAA
GGACATGCAGCAGGACATTTTATGTGAGAAAGCAGACAGCAAGCTATTCCTTGAGTACCTACAGCAGAAG
AAGGAGGAGAAACAGAGGAAATATGACTCCCTGTGGAAAGACTACATCCAGCAGTGTGAGGAGATCGAGG
ACAGGAGGCGAGAGCTGGTCTCTACCTTCACCTCCCGCACGGCAGGCCTCCAGAAACAGCTGGAGCAGGG
CAGGAAGCTTGAGGCCAGCTTGAGGAAGAAGATGAAGGCCCTGGAGCCCGTGGCACAAGTGAAGGAGCAC
CAGGAACAAACGATCCAGGCCTTAGAGCTGGAGAAAGCCAGCATAGGAACTGACCTCTCCTTACTGGACC
GCGAGGCACACCTTCAGTTCCTGAAGGAAAGGGCCGCCTTGGAGAAGCAATTGGAGGATCTGAACCTGCT
GGAGTCTGGAGAGCAAATCACCAGAAAGCTGAAGAAGAAGGCCAAGGCCTTGGATGCCATGGCCAAACAG
GCTCACAAGGGCTTCTGGGAGGGTATTAAAGCTCAGAACAGGGAGCTGAAAACACAGCTCTGGCAGCTGA
ATCAGGAGTTCTGCAAGCTGGAGGCCGGAAAGGAGAAGCTGGAACGGAGAAAGCAGCGGTGGAAAGAGCA
GCAGTGGTACCTGGAGGCTCTGGCCCGGGGGAGAGAGCGCCTGCAGCAGCAGGAGTACCGCAGGCAGCAG
CAGGAGAACCACCACCCCAGACCACAGACAGCTCCTCCACCAGCACTGAGCCGTCTATTAAGTGCCAGGC
CAAAAGCCAATCCTAAGAAATGGCTACCACATCCCAGAAAGCAGACTGGAGCTGAAGCTGGGGCACTACA
CAAAGAATGA

Translation (469 aa):
MESQGSRRGTLYPQRQGSGATLLPNRQKGGTAEPPLLPAKDETVRIREDFSYRATLARKKAIHDFRVRWP
ELILLERKKKEELPVLGQSSSDFLPVASSCSSMVSIINTDLDSTPSELLDSKVLAADSQAPPLQTPHMTI
LNSYLKPESLTRLEKRVRRKTLAAMAELEQDMEAVKRRQSVLIRDIKDMQQDILCEKADSKLFLEYLQQK
KEEKQRKYDSLWKDYIQQCEEIEDRRRELVSTFTSRTAGLQKQLEQGRKLEASLRKKMKALEPVAQVKEH
QEQTIQALELEKASIGTDLSLLDREAHLQFLKERAALEKQLEDLNLLESGEQITRKLKKKAKALDAMAKQ
AHKGFWEGIKAQNRELKTQLWQLNQEFCKLEAGKEKLERRKQRWKEQQWYLEALARGRERLQQQEYRRQQ
QENHHPRPQTAPPPALSRLLSARPKANPKKWLPHPRKQTGAEAGALHKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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