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Report for CCDS42273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42273.1 Public Homo sapiens 17 TBC1D28 24 110 108 CCDS HistoryNCBI Gene:254272Re-query CCDS DB by CCDS ID:42273.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42273.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345096.8 ENSP00000339973.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345096.8Link to Ensembl Protein Viewer:ENSP00000339973.4Re-query CCDS DB by Nucleotide ID:ENST00000345096Re-query CCDS DB by Protein ID:ENSP00000339973
Original member Current member EBI ENST00000405044.7 ENSP00000385821.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000405044.7Link to Ensembl Protein Viewer:ENSP00000385821.1Re-query CCDS DB by Nucleotide ID:ENST00000405044Re-query CCDS DB by Protein ID:ENSP00000385821
Original member Current member NCBI NM_001039397.3 NP_001034486.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039397.3Link to Protein Sequence:NP_001034486.2Re-query CCDS DB by Nucleotide ID:NM_001039397Re-query CCDS DB by Protein ID:NP_001034486Link to BLAST:NP_001034486.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034486.2 210 Q2M2D7 210 100% 0 0

Chromosomal Locations for CCDS 42273.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 18636462 18636597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18637864 18637973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18638313 18638420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18638621 18638701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18639175 18639214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18641022 18641104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18641278 18641352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGGAGATGGATGAGGACCCGGATAACCTGCCTGCCCAGGGGCAAGGCAATATCATCATTACTAAGTATG
AGCAGGGACACCGAGCTGGGGCAGCAGTGGACTTGGGGCATGAGCAGGTTGATGTCAGAAAATACACCAA
TAACCTCGGGATTGTGCATGAGATGGAGCTGCCCCGCGTCAGTGCCCTGGAGGTGAAGCAAAGACGCAAG
GAAAGTAAACGTACCAACAAGTGGCAAAAGATGCTTGCAGACTGGACAAAATATAGGAGCACCAAGAAGC
TGTCTCAAAGAGTATGCAAAGTCATTCCCCTGGCGGTGCGGGGCCGGGCGTTGTCACTTTTGCTAGATAT
TGACAAAATCAAGTCCCAGAACCCAGGCAAATATAAGGTCATGAAGGAGAAGGGCAAGAGGTCCTCCAGA
ATCATCCACTGCATCCAGCTAGATGTCAGCCACACCCTGCAGAAACACATGATGTTCATACAAAGATTCG
GAGTCAAGCAGCAGGAATTATGTGACATCCTCGTGGCCTATTCTGCATATAACCCTGTGAGTATTCCCGG
GCAGCGATATTCCTGGTACCTGTGCCCATATTCACAGGCATGGGTGTCTCTCGGGGGTGTTGCAACTTCT
TGA

Translation (210 aa):
MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPRVSALEVKQRRK
ESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKIKSQNPGKYKVMKEKGKRSSR
IIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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