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Report for CCDS38604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38604.1 Public Mus musculus 3 Ntng1 23 108 98 CCDS HistoryNCBI Gene:80883Re-query CCDS DB by CCDS ID:38604.1Re-query CCDS DB by GeneID:80883See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38604.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072596.11 ENSMUSP00000072397.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072596.11Link to Ensembl Protein Viewer:ENSMUSP00000072397.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072596Re-query CCDS DB by Protein ID:ENSMUSP00000072397
Original member Current member NCBI NM_030699.2 NP_109624.1 Accepted alive Link to Nucleotide Sequence:NM_030699.2Link to Protein Sequence:NP_109624.1Re-query CCDS DB by Nucleotide ID:NM_030699Re-query CCDS DB by Protein ID:NP_109624Link to BLAST:NP_109624.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109624.1 539 Q8R4G0-1 539 100% 0 0

Chromosomal Locations for CCDS 38604.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 109782682 109782911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109827627 109827761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109832468 109832635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109851765 109851791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109872200 109872372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109934569 109935209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 110135263 110135508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGTATTTGTCAAGATTCCTGTCGATCCATGCCCTGTGGGTGACAGTGTCCTCTGTGATGCAGCCCTACC
TTTTCGTGTGGGGACATTATGATGTATGTAAGAGCCTGATTTACACAGAAGAAGGCAAAGTTTGGGATTA
CACAGCCTGCCAGCCGGAATCCACGGACATGACCAAGTATCTGAAAGTGAAACTGGACCCTCCGGATATT
ACCTGTGGAGACCCTCCAGAGTCCTTCTGTGCAATGGGCAACCCTTACATGTGCAATAATGAGTGTGATG
CGAGTACCCCTGAACTGGCACACCCTCCTGAGCTGATGTTTGATTTTGAAGGAAGACATCCCTCCACATT
TTGGCAGTCTGCTACTTGGAAGGAGTACCCCAAACCTCTCCAGGTTAACATCACTCTGTCTTGGAGCAAA
ACCATTGAACTCACAGACAACATAGTTATTACCTTTGAATCGGGGCGTCCAGACCAAATGATCCTAGAGA
AATCTCTCGACTACGGACGAACATGGCAGCCCTATCAGTATTATGCCACAGACTGCCTCCATGCATTCCA
CATGGACCCGAAATCCGTGAAGGATTTATCTCAGCACACGGTCTTGGAAATCATTTGCACGGAAGAGTAC
TCCACTGGGTACTCCACGAATAGCAAAATAATCCACTTCGAGATCAAAGACAGGTTTGCGTTTTTCGCTG
GACCTCGGCTACGAAATATGGCTTCCCTCTATGGACAGCTGGATACAACCAAGAAACTCAGAGATTTCTT
CACTGTCACAGACCTGAGGATCAGGCTGTTGAGACCCGCCGTTGGGGAAATATTTGTAGATGAACTACAT
TTGGCACGTTACTTTTATGCGATCTCAGACATAAAGGTGCGAGGAAGGTGCAAGTGCAACCTGCATGCCA
CTTCGTGTTTGTATGACAACAGCAAACTGACATGTGAATGTGAGCACAACACTACAGGTCCCGACTGTGG
GAAATGCAAGAAGAACTACCAGGGCCGACCTTGGAGCCCCGGCTCATACCTCCCCATCCCCAAAGGCACC
GCAAACACCTGTATCCCCAGCATTTCCAGTATCGGTAACTGTGAATGCTTCGGCCACTCCAATCGGTGCA
GTTATATCGATCTGCTAAACACAGTCATTTGCGTGAGCTGTAAACACAACACTAGAGGGCAGCACTGTGA
GTTATGCAGGCTGGGCTACTTCAGAAATGCTTCTGCACAGCTGGACGATGAGAATGTGTGCATAGAGTGT
TATTGTAACCCTTTGGGCTCAATCCATGATCGTTGTAATGGCTCAGGATTTTGTGAGTGTAAGACTGGAA
CAACAGGGCCTAAATGTGATGAGTGTCTGCCAGGAAATTCCTGGTACTACGGCTGTCAACCTAATGTCTG
CGACAATGAGCTCCTGCACTGCCAGAATGGAGGGACCTGCCAGAACAATGTGCGCTGCGCGTGCCCAGAC
GCCTACACCGGCATCCTCTGTGAGAAGCTACGGTGCGAAGAGGCGGGCAGCTGTGGCTCCGAATCCGGCC
AGGGAGCACCCCCGCGGGGCTCCCCAGCACTGCTGCTGCTGACCATGCTGCTGGGGACTGCCGGTCCCCT
GGTGTTCTAG

Translation (539 aa):
MYLSRFLSIHALWVTVSSVMQPYLFVWGHYDVCKSLIYTEEGKVWDYTACQPESTDMTKYLKVKLDPPDI
TCGDPPESFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSK
TIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLHAFHMDPKSVKDLSQHTVLEIICTEEY
STGYSTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELH
LARYFYAISDIKVRGRCKCNLHATSCLYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGT
ANTCIPSISSIGNCECFGHSNRCSYIDLLNTVICVSCKHNTRGQHCELCRLGYFRNASAQLDDENVCIEC
YCNPLGSIHDRCNGSGFCECKTGTTGPKCDECLPGNSWYYGCQPNVCDNELLHCQNGGTCQNNVRCACPD
AYTGILCEKLRCEEAGSCGSESGQGAPPRGSPALLLLTMLLGTAGPLVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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