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Report for CCDS18888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18888.1 Public Mus musculus 4 Pramel1 23 108 98 CCDS HistoryNCBI Gene:83491Re-query CCDS DB by CCDS ID:18888.1Re-query CCDS DB by GeneID:83491See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18888.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037419.3 ENSMUSP00000043718.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037419.3Link to Ensembl Protein Viewer:ENSMUSP00000043718.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000037419Re-query CCDS DB by Protein ID:ENSMUSP00000043718
Original member Current member NCBI NM_031377.2 NP_113554.1 Accepted alive Link to Nucleotide Sequence:NM_031377.2Link to Protein Sequence:NP_113554.1Re-query CCDS DB by Nucleotide ID:NM_031377Re-query CCDS DB by Protein ID:NP_113554Link to BLAST:NP_113554.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113554.1 458 Q99MW3 458 100% 0 0

Chromosomal Locations for CCDS 18888.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 143396455 143396747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143397050 143397616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143398368 143398884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGAGCTGCAAGACTCCACCCACACTCCAGGAACTGGCAGAGAACAGCCTCCTGAAGAACCAGGACTTGG
CTATCTCTGCTCTGGATGACATACCCTCACTTTTCTTCCCATCACTGTTCAAAAAGGCCTGCAGAAATAG
ATATGTTGGGATCATAAAGGCGATGGTGCAGGCGTGGCCCTTCCCCTGTCTTCCTCTGGGGGCCATGATC
AGTAGGAAGACTGCCTACAGGAGAATCTTAGAGATTATCCTGTATGGGCTTGATGCCTTGCTTTCCCAGA
AAGTTCCCCACAGCAGGTGCAAGCTGCAAGTGCTGGATTTACGGGTTATGCCTTTGAAGCTGTGGAACAG
GTTGCCTGTGTTTGGGACTGCTGGCTGCAGTGAGAATCCAGCAGTGGTGGGCCATTCGGGAACAGAGGTG
AAACAGCCAGTGAAGGTGCTGGTAGACTTGGTCCTCAAGGAAAGCCCACTAGATTCCACAGAGTCCTTCC
TCGTTCAGTGGGTGGATAACAGGAATGGTTTGGTGAGTTTGTGCTGTTGCAAGCTGCAGATCTGGGCTAT
GTCCATGTATTACCACAGAAAACTTTTGGAGATTTTGGATCTGGACTCTGTCCAGGAGCTGCGTATGTAC
TGCATCAGTAATCCTGTCTGCCTGCTTAACTTCGCCCCTTACTTGGGTCGCATGAGGAACCTGCGCTGCC
TCATCCTCTCTCACCTCTGGCAGACCTTCTCGATGACCCCGGTGGAGAAGCAGCAGGTTATTACCCAGTT
CACGTCTCAGTTCCTCAAACTGAAATGCCTCCAGATCCTGCATCTGGATACTGTCTTCTTCCTAGAGGGT
CATCTGGATGAGCTATTCTGGTGGCTGAAGACACCCTTAGAGACCCTGTCTGTGATTGATTGTAATCTCT
CAAAATCAGACTGGTTCCATATATCTGAGTTCCAGTGCACAAGTCAGCTAAAACACCTGAATTTGAAATG
GGTCAAACTGACCCATTTGAGCCCAGAGCCCCTTCGAGTTCTGTTACTAAAATCTGCATCTACCCTAACA
TCCCTGGATTTGGAGGGCTGTCAAATGATGGACTCTCAACTCAGTGCCATCCTACCTGCTCTGAGATGCT
GTACACAGCTCACCAAGTTTAATTTCCATGGGAACTATATCTCCATGCCTATCCTGAGGGAGCTGGCATA
TAACGTTGTCAAGCAGAAATCCCAACAGTCAAAGATACGCTTTATCCCAAGCTGTAGTCATCACAGTGGT
CTGGAGTTTGAGGCCATTTCTCAGCCTCATATTGTGTTTGTAGATGTGGATCGGACTACTGGGGAGCAAG
AACAAGTCTTGTTTTATGCTATTTGTTCTGGAGAATATGTGTTATGA

Translation (458 aa):
MSCKTPPTLQELAENSLLKNQDLAISALDDIPSLFFPSLFKKACRNRYVGIIKAMVQAWPFPCLPLGAMI
SRKTAYRRILEIILYGLDALLSQKVPHSRCKLQVLDLRVMPLKLWNRLPVFGTAGCSENPAVVGHSGTEV
KQPVKVLVDLVLKESPLDSTESFLVQWVDNRNGLVSLCCCKLQIWAMSMYYHRKLLEILDLDSVQELRMY
CISNPVCLLNFAPYLGRMRNLRCLILSHLWQTFSMTPVEKQQVITQFTSQFLKLKCLQILHLDTVFFLEG
HLDELFWWLKTPLETLSVIDCNLSKSDWFHISEFQCTSQLKHLNLKWVKLTHLSPEPLRVLLLKSASTLT
SLDLEGCQMMDSQLSAILPALRCCTQLTKFNFHGNYISMPILRELAYNVVKQKSQQSKIRFIPSCSHHSG
LEFEAISQPHIVFVDVDRTTGEQEQVLFYAICSGEYVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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