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Report for CCDS49223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49223.1 Public Mus musculus 13 Prl3c1 23 108 98 CCDS HistoryNCBI Gene:27372Re-query CCDS DB by CCDS ID:49223.1Re-query CCDS DB by GeneID:27372See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49223.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110364.8 ENSMUSP00000105993.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110364.8Link to Ensembl Protein Viewer:ENSMUSP00000105993.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110364Re-query CCDS DB by Protein ID:ENSMUSP00000105993
Original member Current member EBI ENSMUST00000178072.1 ENSMUSP00000136890.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178072.1Link to Ensembl Protein Viewer:ENSMUSP00000136890.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178072Re-query CCDS DB by Protein ID:ENSMUSP00000136890
Original member Current member NCBI NM_001163218.1 NP_001156690.1 Accepted alive Link to Nucleotide Sequence:NM_001163218.1Link to Protein Sequence:NP_001156690.1Re-query CCDS DB by Nucleotide ID:NM_001163218Re-query CCDS DB by Protein ID:NP_001156690Link to BLAST:NP_001156690.1

Chromosomal Locations for CCDS 49223.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27199353 27199478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27200696 27200779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27202304 27202483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27203424 27203612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGTTCCTGTGGGTATATGTGACTGCCACACGATATGACCGGAAATCCAATGAAGAGATCTATGACAATC
TGCTTTCCTCTTCTCGTCACATCCATAGAGTTGCCAAAAAAATGTATAAAATCTTAGACTCAAAGTTAAC
TGAGGGAGTATGTTTTAGGAATAAAAACACCAAGATGTGCCAAACCATTTCTACACATTCTGTAAAAAAG
AATGAAGACCTTCTGAAAGTCATCATCAATGTTTCAAATTTCTGGACATATCCACTGAAAATGCTCATAC
CTGCAGTGTTGACTCATCTAGATTCTGATGATGGGATGATGACAAGAGCTGTAGAGCTTAACTATGGAAA
TAAAGTCGTTCTGGAGGGAGCAAAAGCTTTACTTAGTAGGATTCAGCCTGGAATTGAAGAAAATAACGAG
CCTGACAGGTGGTCAGACCTAAGAGAATTGAGGTCCTCCAAAAAAAGCAAGCACCTTCTTGCATTTTGTA
AATTCTTCTACTGTCTACGCAAGGATACAAAAATGGTTACATGTTATCTCAGGGCTCTGAAGCATGGCAA
AATCAAAACCATTTGCTAA

Translation (192 aa):
MFLWVYVTATRYDRKSNEEIYDNLLSSSRHIHRVAKKMYKILDSKLTEGVCFRNKNTKMCQTISTHSVKK
NEDLLKVIINVSNFWTYPLKMLIPAVLTHLDSDDGMMTRAVELNYGNKVVLEGAKALLSRIQPGIEENNE
PDRWSDLRELRSSKKSKHLLAFCKFFYCLRKDTKMVTCYLRALKHGKIKTIC


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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