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Report for CCDS24055.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24055.1 Public Mus musculus 10 Hmg20b 23 108 98 CCDS HistoryNCBI Gene:15353Re-query CCDS DB by CCDS ID:24055.1Re-query CCDS DB by GeneID:15353See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24055.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020454.10 ENSMUSP00000020454.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020454.10Link to Ensembl Protein Viewer:ENSMUSP00000020454.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020454Re-query CCDS DB by Protein ID:ENSMUSP00000020454
Original member Current member EBI ENSMUST00000105323.7 ENSMUSP00000100960.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105323.7Link to Ensembl Protein Viewer:ENSMUSP00000100960.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105323Re-query CCDS DB by Protein ID:ENSMUSP00000100960
Original member Current member EBI ENSMUST00000105324.8 ENSMUSP00000100961.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105324.8Link to Ensembl Protein Viewer:ENSMUSP00000100961.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105324Re-query CCDS DB by Protein ID:ENSMUSP00000100961
Original member Current member EBI ENSMUST00000167481.7 ENSMUSP00000128807.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167481.7Link to Ensembl Protein Viewer:ENSMUSP00000128807.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167481Re-query CCDS DB by Protein ID:ENSMUSP00000128807
Original member NCBI NM_001163165.1 NP_001156637.1 Updated not alive Link to Nucleotide Sequence:NM_001163165.1Link to Protein Sequence:NP_001156637.1Re-query CCDS DB by Nucleotide ID:NM_001163165Re-query CCDS DB by Protein ID:NP_001156637
Current member NCBI NM_001163165.2 NP_001156637.1 Accepted alive Link to Nucleotide Sequence:NM_001163165.2Link to Protein Sequence:NP_001156637.1Re-query CCDS DB by Nucleotide ID:NM_001163165Re-query CCDS DB by Protein ID:NP_001156637Link to BLAST:NP_001156637.1
Original member Current member NCBI NM_001163166.1 NP_001156638.1 Accepted alive Link to Nucleotide Sequence:NM_001163166.1Link to Protein Sequence:NP_001156638.1Re-query CCDS DB by Nucleotide ID:NM_001163166Re-query CCDS DB by Protein ID:NP_001156638Link to BLAST:NP_001156638.1
Original member NCBI NM_010440.3 NP_034570.1 Updated not alive Link to Nucleotide Sequence:NM_010440.3Link to Protein Sequence:NP_034570.1Re-query CCDS DB by Nucleotide ID:NM_010440Re-query CCDS DB by Protein ID:NP_034570
Current member NCBI NM_010440.4 NP_034570.1 Accepted alive Link to Nucleotide Sequence:NM_010440.4Link to Protein Sequence:NP_034570.1Re-query CCDS DB by Nucleotide ID:NM_010440Re-query CCDS DB by Protein ID:NP_034570Link to BLAST:NP_034570.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156637.1 317 Q9Z104 317 100% 0 0
NP_001156638.1 317 Q9Z104 317 100% 0 0
NP_034570.1 317 Q9Z104 317 100% 0 0

Chromosomal Locations for CCDS 24055.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81346465 81346477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81346560 81346692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81346841 81347056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81347436 81347508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81347986 81348032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81348496 81348616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81348886 81349089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81349380 81349488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81350134 81350171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGTCCCACGGTCCCCGGCAGCCAGGCGCAGCCACCGCACCTGCGGGAGGCAAGACTCCGGGCCAGCACG
GGGCCTTTGTAGTGGCTGTCAAGCAGGAGCGCAGCGAGGGTTCCCGAGCTGGAGAGAAGGGGCCCCAGGA
GGAGGAGCCAGTGAAGAAGCGAGGCTGGCCCAAAGGCAAAAAAAGAAAGAAGATTCTCCCAAATGGGCCC
AAGGCCCCCGTCACTGGCTATGTTCGCTTCCTGAATGAGAGGCGGGAACAGATTCGCACCCGCCACCCGG
ACCTTCCATTCCCGGAGATCACGAAGATGTTGGGCGCCGAGTGGAGCAAGCTGCAGCCGGCAGAGAAGCA
GCGGTACCTGGATGAGGCAGAGAAGGAGAAACAGCAGTACTTGAAGGAGCTGTGGGCATACCAGCAGTCA
GAGGCCTACAAGGTCTGCACTGAGAAGATTCAAGAAAACAAAATTAAAAAAGAGGACTCCAGTTCTGGGC
TCATGAACACCCTCCTGAATGGGCACAAGGGTGTGGACTGCGATGGCTTTTCCACCTTTGATGTGCCCAT
CTTCACGGAAGAGTTTCTGGACCAAAACAAAGCACGCGAGGCAGAGCTGCGGCGCCTGAGAAAGATGAAC
GTGGCCTTCGAGGAGCAGAATGCGGTGCTGCAGCGCCACACGCAGAGCATGAGCAGCGCGCGTGAGCGTC
TGGAGCAGGAGTTGGCGCTGGAGGAGCGGCGCACACTGGCATTGCAGCAGCAACTACAGGCCGTGAGGCA
GGCGCTCACGGCTAGCTTCGCCTCCCTGCCGGTGCCCGGCACCGGGGAGACACCGACCCTCGGGACGCTG
GACTTTTACATGGCGCGGCTTCATGGAGCCATCGAGCGCGACCCCGCGCAGCACGAGAGACTGATCGCGC
GCGTCAAGGAGATCCTGGCGCGGGTAGCCAGCGAGCACCTGTGA

Translation (317 aa):
MSHGPRQPGAATAPAGGKTPGQHGAFVVAVKQERSEGSRAGEKGPQEEEPVKKRGWPKGKKRKKILPNGP
KAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQS
EAYKVCTEKIQENKIKKEDSSSGLMNTLLNGHKGVDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMN
VAFEEQNAVLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTL
DFYMARLHGAIERDPAQHERLIARVKEILARVASEHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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