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Report for CCDS50023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50023.1 Public Mus musculus 17 Eme2 23 108 98 CCDS HistoryNCBI Gene:193838Re-query CCDS DB by CCDS ID:50023.1Re-query CCDS DB by GeneID:193838See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121542.1 ENSMUSP00000113936.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121542.1Link to Ensembl Protein Viewer:ENSMUSP00000113936.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121542Re-query CCDS DB by Protein ID:ENSMUSP00000113936
Original member Current member NCBI NM_001163102.1 NP_001156574.1 Accepted alive Link to Nucleotide Sequence:NM_001163102.1Link to Protein Sequence:NP_001156574.1Re-query CCDS DB by Nucleotide ID:NM_001163102Re-query CCDS DB by Protein ID:NP_001156574Link to BLAST:NP_001156574.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156574.1 373 Q56A04 373 100% 0 0

Chromosomal Locations for CCDS 50023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24892513 24892683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24892755 24892944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24893039 24893154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24893305 24893398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24893551 24893642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24894131 24894223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24894571 24894707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24894821 24895049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGGCGGAGGTTGGTCCCGGGAGAGTCACGGTCTCGCGTCTCGGTCGGGGCCTGCGTCTCGGCCATCGGC
GACCTCAAACCTGGGAGATTTCCGACTCAGACGGTGAAGGTGTCCCCGCTAGGGAGGTCGGCACGCAAGC
CCCGAGTCCAGCAGGAGAGCGCAGAGCTGCAGCCAAGGCTTTACGGGCAGATCAGGTTCTGGGGCGACTG
GTGGTGTGCGTGGACCCAGCTGTCCTGGAAGATGCAGGCTCTGACATCCTGATGGAGGCGCTGGGCACGC
TAGGCTGTGAATGCCGCATCGAACCGCAGCACCAGGCCCGCAGCCTGCAGTGGAACGTTGTCAGGCCCGA
CCCGGCCCCCAGCAATGTGCCTCTGGAGGCGAAGGCTGAAAATGAGCAGGAACAGTTGCTGCTGCTGGAA
CCCCAGGAATTTCTTCAGGGTGCTGCGCAGCTGACCCAGATCACAGATCCACCTTGCTCCATCCCCTGGC
TTTCTCCCAAGAGTCTCACCCGCTCCCATCTGGCTGTCATTGGACTGGACGCATACCTGTGGTCTCACCA
GCTCAGTTCTCAGAAGACATGGCAACTAAAGAAGTCAAAGGAAGCCCATGCCAGGGGAGCCATCAGCTGG
GCTGAGGTGGAGGAGATCCTGGTGCTGCTGCAGCTCCATGCAAACCTGGATGTGCTGCTGATGGCTTCGT
GGCAGGAGCTGAGTCAGTACGTGTGTGCCTTCACCAGGGCCCTCTCGCAGCTCCCCTCGAAGCAGCACCG
GGACTCCCAGGCCTTTTCTTTCTGCACAGCAGGGCACTGGGCCTCAGGCCAGCAAGTGACCAGAGATGGC
TCTGGGCTCAGAGGAGTGTGGTGGCGACAAATCAGACAGTTCAACCGGGTCAGCCCAGCTGTGGCTGACG
CTGTTGTTACTGCCTTCCCATCACCCCGCCTTTTGCAACAGGCTCTCCTGGACTGCAGCACAGAGCAAGA
ACGCCTGAGCCTCCTAGCTGATCTCCCTGTGAAGGCCCACAAAGGCAAGCAGCCTCGCAGAGTGGGGCCT
GACCTCTCACGCAGAATCTGTATCTTCTTGACAACCACCAACCCTGACCTCCTGCTGGACCTGAGCTCTT
GA

Translation (373 aa):
MAEVGPGRVTVSRLGRGLRLGHRRPQTWEISDSDGEGVPAREVGTQAPSPAGERRAAAKALRADQVLGRL
VVCVDPAVLEDAGSDILMEALGTLGCECRIEPQHQARSLQWNVVRPDPAPSNVPLEAKAENEQEQLLLLE
PQEFLQGAAQLTQITDPPCSIPWLSPKSLTRSHLAVIGLDAYLWSHQLSSQKTWQLKKSKEAHARGAISW
AEVEEILVLLQLHANLDVLLMASWQELSQYVCAFTRALSQLPSKQHRDSQAFSFCTAGHWASGQQVTRDG
SGLRGVWWRQIRQFNRVSPAVADAVVTAFPSPRLLQQALLDCSTEQERLSLLADLPVKAHKGKQPRRVGP
DLSRRICIFLTTTNPDLLLDLSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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