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Report for CCDS54171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54171.1 Public Homo sapiens 17 C17orf99 24 110 108 CCDS HistoryNCBI Gene:100141515Re-query CCDS DB by CCDS ID:54171.1Re-query CCDS DB by GeneID:100141515See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54171.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340363.10 ENSP00000343493.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340363.10Link to Ensembl Protein Viewer:ENSP00000343493.4Re-query CCDS DB by Nucleotide ID:ENST00000340363Re-query CCDS DB by Protein ID:ENSP00000343493
Original member Current member NCBI NM_001163075.2 NP_001156547.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001163075.2Link to Protein Sequence:NP_001156547.1Re-query CCDS DB by Nucleotide ID:NM_001163075Re-query CCDS DB by Protein ID:NP_001156547Link to BLAST:NP_001156547.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156547.1 265 Q6UX52 265 100% 0 0

Chromosomal Locations for CCDS 54171.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 78146408 78146444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78146879 78146911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78160955 78161254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78164095 78164364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78165889 78166046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGGGGCTCCCTGGGCTGTTCTGCTTGGCCGTGCTGGCTGCCAGCAGCTTCTCCAAGGCACGGGAGGAAG
AAATTACCCCTGTGGTCTCCATTGCCTACAAAGTCCTGGAAGTTTTCCCCAAAGGCCGCTGGGTGCTCAT
AACCTGCTGTGCACCCCAGCCACCACCGCCCATCACCTATTCCCTCTGTGGAACCAAGAACATCAAGGTG
GCCAAGAAGGTGGTGAAGACCCACGAGCCGGCCTCCTTCAACCTCAACGTCACACTCAAGTCCAGTCCAG
ACCTGCTCACCTACTTCTGCTGGGCGTCCTCCACCTCAGGTGCCCATGTGGACAGTGCCAGGCTACAGAT
GCACTGGGAGCTGTGGTCCAAGCCAGTGTCTGAGCTGCGGGCCAACTTCACTCTGCAGGACAGAGGGGCA
GGCCCCAGGGTGGAGATGATCTGCCAGGCGTCCTCGGGCAGCCCACCTATCACCAACAGCCTGATCGGGA
AGGATGGGCAGGTCCACCTGCAGCAGAGACCATGCCACAGGCAGCCTGCCAACTTCTCCTTCCTGCCGAG
CCAGACATCGGACTGGTTCTGGTGCCAGGCTGCAAACAACGCCAATGTCCAGCACAGCGCCCTCACAGTG
GTGCCCCCAGGTGGTGACCAGAAGATGGAGGACTGGCAGGGTCCCCTGGAGAGCCCCATCCTTGCCTTGC
CGCTCTACAGGAGCACCCGCCGTCTGAGTGAAGAGGAGTTTGGGGGGTTCAGGATAGGGAATGGGGAGGT
CAGAGGACGCAAAGCAGCAGCCATGTAG

Translation (265 aa):
MGLPGLFCLAVLAASSFSKAREEEITPVVSIAYKVLEVFPKGRWVLITCCAPQPPPPITYSLCGTKNIKV
AKKVVKTHEPASFNLNVTLKSSPDLLTYFCWASSTSGAHVDSARLQMHWELWSKPVSELRANFTLQDRGA
GPRVEMICQASSGSPPITNSLIGKDGQVHLQQRPCHRQPANFSFLPSQTSDWFWCQAANNANVQHSALTV
VPPGGDQKMEDWQGPLESPILALPLYRSTRRLSEEEFGGFRIGNGEVRGRKAAAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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