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Report for CCDS23480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23480.1 Public Mus musculus 9 Parp3 23 108 98 CCDS HistoryNCBI Gene:235587Re-query CCDS DB by CCDS ID:23480.1Re-query CCDS DB by GeneID:235587See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23480.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067218.13 ENSMUSP00000064513.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067218.13Link to Ensembl Protein Viewer:ENSMUSP00000064513.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067218Re-query CCDS DB by Protein ID:ENSMUSP00000064513
Original member Current member EBI ENSMUST00000123555.7 ENSMUSP00000123054.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123555.7Link to Ensembl Protein Viewer:ENSMUSP00000123054.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123555Re-query CCDS DB by Protein ID:ENSMUSP00000123054
Original member Current member NCBI NM_145619.3 NP_663594.2 Accepted alive Link to Nucleotide Sequence:NM_145619.3Link to Protein Sequence:NP_663594.2Re-query CCDS DB by Nucleotide ID:NM_145619Re-query CCDS DB by Protein ID:NP_663594Link to BLAST:NP_663594.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663594.2 528 Q3ULW8-2 528 100% 0 0

Chromosomal Locations for CCDS 23480.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 106471233 106471402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106471760 106471915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106473029 106473206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106473433 106473519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106473681 106473833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106474058 106474284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106474397 106474520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106474680 106474868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106475023 106475148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106475799 106475975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGGCTCCAAAACGAAAGGCCTCTGTGCAGACTGAGGGCTCCAAGAAGCGGCGACAAGGGACAGAGGAGG
AGGACAGCTTCCGGTCCACTGCCGAGGCTCTCAGAGCAGCACCTGCTGATAATCGGGTCATCCGTGTGGA
CCCCTCATGTCCATTCAGCCGGAACCCCGGGATACAGGTCCACGAGGACTATGACTGTACCCTGAACCAG
ACCAACATCGGCAACAACAACAACAAGTTCTATATTATCCAACTGCTGGAGGAGGGTAGTCGCTTCTTCT
GCTGGAATCGCTGGGGCCGCGTGGGAGAGGTGGGCCAGAGCAAGATGAACCACTTCACCTGCCTGGAAGA
TGCAAAGAAGGACTTTAAGAAGAAATTTTGGGAGAAGACTAAAAACAAATGGGAGGAGCGGGACCGTTTT
GTGGCCCAGCCCAACAAGTACACACTTATAGAAGTCCAGGGAGAAGCAGAGAGCCAAGAGGCTGTAGTGA
AGGTGTACAGCGGCCCTGTGAGGACCGTGGTCAAGCCCTGCTCCCTAGACCCTGCCACCCAGAACCTTAT
CACCAACATCTTCAGCAAAGAGATGTTCAAGAATGCAATGACCCTCATGAACCTGGATGTGAAGAAGATG
CCCTTGGGAAAGCTGACCAAGCAGCAGATTGCCCGTGGCTTCGAGGCCTTGGAAGCTCTAGAGGAGGCCA
TGAAAAACCCCACAGGGGATGGCCAGAGCCTGGAAGAGCTCTCCTCCTGCTTCTACACTGTCATCCCACA
CAACTTCGGCCGCAGCCGACCCCCGCCCATCAACTCCCCTGATGTGCTTCAGGCCAAGAAGGACATGCTG
CTGGTGCTAGCGGACATCGAGTTGGCGCAGACCTTGCAGGCAGCCCCTGGGGAGGAGGAGGAGAAAGTGG
AAGAGGTGCCACACCCACTGGATCGAGACTACCAGCTCCTCAGGTGCCAGCTTCAACTGCTGGACTCCGG
GGAGTCCGAGTACAAGGCAATACAGACCTACCTGAAACAGACTGGCAACAGCTACAGGTGCCCAGACCTG
CGGCATGTTTGGAAAGTGAACCGAGAAGGGGAGGGAGACAGGTTCCAGGCCCACTCCAAACTGGGCAATC
GGAGGCTGCTGTGGCACGGCACCAATGTGGCCGTGGTGGCTGCCATCCTCACCAGTGGGCTCCGAATCAT
GCCACACTCGGGTGGTCGTGTTGGCAAGGGTATTTATTTTGCCTCTGAGAACAGCAAGTCAGCTGGCTAT
GTTACCACCATGCACTGTGGGGGCCACCAGGTGGGCTACATGTTCCTGGGCGAGGTGGCCCTCGGCAAAG
AGCACCACATCACCATCGATGACCCCAGCTTGAAGAGTCCACCCTCTGGCTTTGACAGCGTCATCGCCCG
AGGCCAAACGGAGCCGGATCCCGCCCAGGACATTGAACTCGAACTGGATGGGCAGCCGGTGGTGGTGCCC
CAAGGCCCGCCTGTGCAGTGCCCGTCATTCAAAAGCTCCAGCTTCAGCCAGAGTGAATACCTCATATACA
AGGAGAGCCAGTGTCGCCTGCGCTACCTGCTGGAGATTCACCTCTAA

Translation (528 aa):
MAPKRKASVQTEGSKKRRQGTEEEDSFRSTAEALRAAPADNRVIRVDPSCPFSRNPGIQVHEDYDCTLNQ
TNIGNNNNKFYIIQLLEEGSRFFCWNRWGRVGEVGQSKMNHFTCLEDAKKDFKKKFWEKTKNKWEERDRF
VAQPNKYTLIEVQGEAESQEAVVKVYSGPVRTVVKPCSLDPATQNLITNIFSKEMFKNAMTLMNLDVKKM
PLGKLTKQQIARGFEALEALEEAMKNPTGDGQSLEELSSCFYTVIPHNFGRSRPPPINSPDVLQAKKDML
LVLADIELAQTLQAAPGEEEEKVEEVPHPLDRDYQLLRCQLQLLDSGESEYKAIQTYLKQTGNSYRCPDL
RHVWKVNREGEGDRFQAHSKLGNRRLLWHGTNVAVVAAILTSGLRIMPHSGGRVGKGIYFASENSKSAGY
VTTMHCGGHQVGYMFLGEVALGKEHHITIDDPSLKSPPSGFDSVIARGQTEPDPAQDIELELDGQPVVVP
QGPPVQCPSFKSSSFSQSEYLIYKESQCRLRYLLEIHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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