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Report for CCDS15645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15645.1 Public Mus musculus 2 Rpp38 23 108 98 CCDS HistoryNCBI Gene:227522Re-query CCDS DB by CCDS ID:15645.1Re-query CCDS DB by GeneID:227522See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15645.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062672.6 ENSMUSP00000050992.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062672.6Link to Ensembl Protein Viewer:ENSMUSP00000050992.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000062672Re-query CCDS DB by Protein ID:ENSMUSP00000050992
Original member Current member NCBI NM_001013376.2 NP_001013394.2 Accepted alive Link to Nucleotide Sequence:NM_001013376.2Link to Protein Sequence:NP_001013394.2Re-query CCDS DB by Nucleotide ID:NM_001013376Re-query CCDS DB by Protein ID:NP_001013394Link to BLAST:NP_001013394.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013394.2 280 Q80UU2 280 99.6429% 0 1

Chromosomal Locations for CCDS 15645.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 3329021 3329863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGGCTGCAGCCCCTCAGGCACCAAAGAGGGGATCTATTCGGAAGACTAGACCTCTGGTTGTAAAAACAT
CACTAAACAACCCTTATGTTATTTCCTGGAGCACCTTGGAGAGAGAAGACATACACTTTATATTACAGAC
TCTCGAAGCCAAGTTTAAATTGATTGGACTTCAGAAAATTGAAGATAAGAAGAAAAGGAAAAAAACAGCT
CTTATGAAAAAGCAAAGTTGCCGGCCAGATATTGAGATTAGCGAGGATCCAAAAGAGCCTGATGGGGATG
TGCTGGTGTCAGGGTGGACACCTGTACACGTCAGGAAACAGCTGGTCATTGGTGTTAATGAAGTCACCAG
AGCTCTGGAGAGGAATGAACTGCTCCTGGTTCTAGTGTGTAAGTCAGTCAAGCCTGCCATCATCACCTCA
CACCTGATTCAGCTGAGTCTAAGCAGAACTGTTCCTGCCTGTCAGGTACCTCAGCTCAGCGAGAGAATTG
CTCCTGTCATTGGCTTAAAATGTGTGCTAGCCTTGGGTTTCAGAAAGAACACCAGGGACTTTGCTGATGA
AGTAGAAGCCATCATTCCCAGGGTGCCCAGCTTAAACGTGCCATGGCTTCCAGACAGAACCCAAGGTCCC
ACAGACAGTTTAGAGACTGAACCCTCGGAAAGCCAGGACAACGAGATTTTGGACACGTCATTTGATGACC
TTACAAAACTTAGTAAGAGGAAGCTTGCTGAAGGTGGACAAGCTTCAGCTGCAACATTACAACCCCTTAA
AATAAAAAAGCTCATTCCCAACCCTAGTAAGATAAGAAAACCACCCAAAAGTAAAAAGTCCATTTCCAAG
TAG

Translation (280 aa):
MAAAPQAPKRGSIRKTRPLVVKTSLNNPYVISWSTLEREDIHFILQTLEAKFKLIGLQKIEDKKKRKKTA
LMKKQSCRPDIEISEDPKEPDGDVLVSGWTPVHVRKQLVIGVNEVTRALERNELLLVLVCKSVKPAIITS
HLIQLSLSRTVPACQVPQLSERIAPVIGLKCVLALGFRKNTRDFADEVEAIIPRVPSLNVPWLPDRTQGP
TDSLETEPSESQDNEILDTSFDDLTKLSKRKLAEGGQASAATLQPLKIKKLIPNPSKIRKPPKSKKSISK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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