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Report for CCDS29387.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29387.1 Public Mus musculus 18 Neto1 23 108 98 CCDS HistoryNCBI Gene:246317Re-query CCDS DB by CCDS ID:29387.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29387.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058829.3 ENSMUSP00000057340.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058829.3Link to Ensembl Protein Viewer:ENSMUSP00000057340.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000058829Re-query CCDS DB by Protein ID:ENSMUSP00000057340
Original member Current member NCBI NM_144946.5 NP_659195.3 Accepted alive Link to Nucleotide Sequence:NM_144946.5Link to Protein Sequence:NP_659195.3Re-query CCDS DB by Nucleotide ID:NM_144946Re-query CCDS DB by Protein ID:NP_659195Link to BLAST:NP_659195.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659195.3 533 Q8R4I7 533 100% 0 0

Chromosomal Locations for CCDS 29387.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 86395883 86395910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 86397958 86398011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 86398252 86398389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 86404640 86404888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 86461042 86461083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 86461200 86461327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 86473615 86473843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 86494750 86494863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 86498542 86499100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 86500013 86500073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGATCTATGGACGCAGTTTGTTTCACATTATAGCAAGTTTAATCATCCTCCATTCTTCTGGAGCAACCA
AGAAAGGAACAGAAAAACAAATCACCCCAGAAACACAGAAGTCAGTGCAGTGTGGAACGTGGACAAAGCA
TGCAGAGGGAGGTGTCTTTACGTCTCCCAATTATCCCAGCAAATATCCCCCAGACCGAGAGTGTGTCTAC
ATCATAGAAGCTGCCCCAAGGCAGTGCATTGAACTTTACTTTGATGAAAAATACTCAATCGAACCATCTT
GGGAGTGCAAATTTGATCATATTGAAGTTCGAGATGGACCCTTTGGCTTTTCTCCAATAATTGGAAGGTT
CTGTGGACAACAGAATCCACCTGTAATAAAATCTAGTGGAAGATTTCTGTGGATTAAATTTTTTGCTGAT
GGCGAGCTGGAGTCTATGGGATTTTCAGCTCGATATAATTTCACACCTGATCCCGACTTTAAGGACCTTG
GAGTTTTGAAACCATTGCCAGCGTGTGAGTTTGAGATGGGCGGCCCGGAAGGAATTGTGGAGTCCATACA
GATTCTGAAGGAAGGCAAAGCTTCTGCCAGTGAAGCCGTGGATTGCAAATGGTACATCCGAGCCCCACCA
CGATCCAAGATTTACTTACGTTTCTTGGACTATGAGATGCAGAATTCAAATGAGTGCAAAAGAAACTTTG
TGGCGGTCTATGACGGAAGCAGCTCCGTGGAGGATTTGAAGGCCAAGTTCTGCAGCACAGTGGCTAATGA
CGTCATGCTGCGCACAGGCCTTGGGGTGATCCGCATGTGGGCAGACGAGGGTAGCCGTAACAGCAGGTTT
CAGATGCTCTTCACATCCTTTCAAGAACCTCCCTGTGAAGGCAACACATTCTTCTGCCACAGTAACATGT
GTATTAACAACACGCTAGTCTGCAATGGGCTCCAGAACTGTGTATATCCCTGGGATGAAAATCACTGTAA
AGAAAAGAGGAAAACCAGCCTGCTGGATCAGCTGACCAACACCAGTGGGACGGTCATTGGCGTGACTTCC
TGCATTGTGATCATCCTTATTATCGTTTCTGTCATTGTACAGATCAAACAGCCTCGTAAAAAATACGTCC
AAAGGAAGTCAGACTTTGACCAGACCGTTTTCCAGGAGGTGTTTGAGCCTCCCCACTATGAGTTATGTAC
GCTCAGAGGAACTGGAGCAACAGCCGACTTTGCAGACGTGGCGGAAGACTTTGAAAATTACCATAAACTG
AGGAGATCATCTTCCAAATGCATCCATGACCATCACTGTGGATCCCAACTGTCCAGCGCGAAAGGCAGTC
GCAGTAACCTCAGCACAAGGGACGCTTCCATTTTGGCAGAGATACCCACACAGCCAGTCAAGCCCCTCAT
CCCACCCGTGAACAGAAGGAACATCCTGGTCATGAAACACAACTACTCACAAGATGCCGCCGATGCCTGT
GACATCGACGAGATTGAGGAGGTGCCCACCACAAGCCACAGGCTATCCAGACACGAAAAATCTGTCCAGC
GGTTCTGCCTCATTGGGTCTCTAAGCAAACATGAATCTGAATACAACACAACTAGGGTCTAA

Translation (533 aa):
MIYGRSLFHIIASLIILHSSGATKKGTEKQITPETQKSVQCGTWTKHAEGGVFTSPNYPSKYPPDRECVY
IIEAAPRQCIELYFDEKYSIEPSWECKFDHIEVRDGPFGFSPIIGRFCGQQNPPVIKSSGRFLWIKFFAD
GELESMGFSARYNFTPDPDFKDLGVLKPLPACEFEMGGPEGIVESIQILKEGKASASEAVDCKWYIRAPP
RSKIYLRFLDYEMQNSNECKRNFVAVYDGSSSVEDLKAKFCSTVANDVMLRTGLGVIRMWADEGSRNSRF
QMLFTSFQEPPCEGNTFFCHSNMCINNTLVCNGLQNCVYPWDENHCKEKRKTSLLDQLTNTSGTVIGVTS
CIVIILIIVSVIVQIKQPRKKYVQRKSDFDQTVFQEVFEPPHYELCTLRGTGATADFADVAEDFENYHKL
RRSSSKCIHDHHCGSQLSSAKGSRSNLSTRDASILAEIPTQPVKPLIPPVNRRNILVMKHNYSQDAADAC
DIDEIEEVPTTSHRLSRHEKSVQRFCLIGSLSKHESEYNTTRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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