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Report for CCDS24023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24023.1 Public Mus musculus 10 Onecut3 23 108 98 CCDS HistoryNCBI Gene:246086Re-query CCDS DB by CCDS ID:24023.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051773.8 ENSMUSP00000053288.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051773.8Link to Ensembl Protein Viewer:ENSMUSP00000053288.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000051773Re-query CCDS DB by Protein ID:ENSMUSP00000053288
Original member Current member NCBI NM_139226.3 NP_631972.2 Accepted alive Link to Nucleotide Sequence:NM_139226.3Link to Protein Sequence:NP_631972.2Re-query CCDS DB by Nucleotide ID:NM_139226Re-query CCDS DB by Protein ID:NP_631972Link to BLAST:NP_631972.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631972.2 490 Q8K557 490 100% 0 0

Chromosomal Locations for CCDS 24023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80495008 80496190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80513857 80514146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGAGTTGAGCTTGGAGAGCCTCGGGGGGCTGCACGGGGTGACACACGCGCAAGCCGGCGAGCTGCTGA
GCCCGGGCCACGCGCGCTCCGCCGCGGCCCAACACCGAAGCCTAGTGGCATCGGGGCGCCCAGGCCTGGT
GGCCGGCATGGCTAGCCTGCTGGACGGTGGTGGCGCCGGGGGCGGGGGCGCCGGGGGCGCGGGGGCTGCA
GGGGCCGCGGGTGGTGGCCCTGACTTCCGTGGGGAGCTGGCTGGCCCCCTGCACCCGGCCATGGGTATGG
CGTGCGAGGCCCCAGGTTTGGGTGGCACCTACACCACGCTCACGCCCTTGCAGCACCTGCCGCCGCTGGC
CGCCGTGGCCGATAAGTTCCACCAGCACGCGGTGGCTGGGGCGCACGGAGGCCATCCACACGCTCACCCT
CACCCGGCCACCGCGCCGCCACCGCCCCCTCCGCAGCGCCTGGCGGCCAGCGTGAGCGGCAGCTTCACCC
TCATGCGCGACGAGCGGGCGGCGCTGGCCTCGGTGGGCCACCTCTACGGGCCTTATGGCAAGGAGCTGCC
CACCATGGGGTCGCCACTGTCGCCGCTGCCCAGCGCGCTGCCCCCCGCTCTGCACAGCGCCCCGCAGCCG
CCGCCGCCGCCACCGCTCGCCGCTTACGGGGCTCCGGGCCACCTGGCCGGGGACAAACTACTGCCACCTG
CCGCCTTCGAGCCACACGCGGCGCTTCTGGGGCGCGCAGAGGACGCGCTGGCCCGAGGGCTGCCTGGAGG
CGGCGGCGGCGCGGGAGGCGGCGGGGCGGCCGGCGGGGCGGCCGCGGGTTTGCTGGCTCCGCTGGGCGGG
CTGGCTGCGGCCGGGGCGCACGGGCCTCACTCAGGCGGCGGTGGCCCCGGAGGGGGCGGTGGCGCTGGCG
GCGGCAGCGGCGGCCCGGGAGCCGGCGCTGCAGCCGAAGAGATCAACACCAAAGAGGTGGCCCAGCGCAT
CACCGCCGAGCTGAAGCGCTACAGCATCCCGCAGGCCATCTTCGCGCAGCGCATCCTGTGCCGCTCGCAG
GGCACGCTCTCCGACCTGCTGCGCAACCCGAAGCCCTGGAGCAAGCTCAAATCCGGCCGCGAGACCTTCC
GCAGGATGTGGAAGTGGCTGCAGGAGCCGGAGTTCCAGCGCATGTCGGCGCTGCGCCTGGCAGCCTGCAA
GCGTAAAGAGCAGGATCAGCAGAAGGAGAGGGCTCTGCAGCCGAAGAAGCAACGCCTCGTGTTCACAGAC
CTGCAGCGCCGCACGCTGATTGCCATCTTCAAGGAGAACAAGCGGCCGTCCAAGGAGATGCAAGCCACCA
TCTCGCAGCAGCTGGGCCTGGAGCTCAACACTGTCAGCAACTTCTTCATGAACGCCCGTCGCCGCTGCAT
GAACCGCTGGGCTGAGGAGCCGGGTGCCACCCCTGGCACCGGGACAGCTACTGCCACCTTCTCCAAGGCC
TGA

Translation (490 aa):
MELSLESLGGLHGVTHAQAGELLSPGHARSAAAQHRSLVASGRPGLVAGMASLLDGGGAGGGGAGGAGAA
GAAGGGPDFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAVAGAHGGHPHAHP
HPATAPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPTMGSPLSPLPSALPPALHSAPQP
PPPPPLAAYGAPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGAGGGGAAGGAAAGLLAPLGG
LAAAGAHGPHSGGGGPGGGGGAGGGSGGPGAGAAAEEINTKEVAQRITAELKRYSIPQAIFAQRILCRSQ
GTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQDQQKERALQPKKQRLVFTD
LQRRTLIAIFKENKRPSKEMQATISQQLGLELNTVSNFFMNARRRCMNRWAEEPGATPGTGTATATFSKA


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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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