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Report for CCDS35622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35622.1 Public Mus musculus 1 Atg9a 23 108 98 CCDS HistoryNCBI Gene:245860Re-query CCDS DB by CCDS ID:35622.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35622.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040689.14 ENSMUSP00000047449.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040689.14Link to Ensembl Protein Viewer:ENSMUSP00000047449.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040689Re-query CCDS DB by Protein ID:ENSMUSP00000047449
Original member Current member EBI ENSMUST00000189702.6 ENSMUSP00000139641.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189702.6Link to Ensembl Protein Viewer:ENSMUSP00000139641.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189702Re-query CCDS DB by Protein ID:ENSMUSP00000139641
Original member Current member EBI ENSMUST00000188347.6 ENSMUSP00000139731.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188347.6Link to Ensembl Protein Viewer:ENSMUSP00000139731.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188347Re-query CCDS DB by Protein ID:ENSMUSP00000139731
Original member NCBI NM_001003917.4 NP_001003917.2 Updated not alive Link to Nucleotide Sequence:NM_001003917.4Link to Protein Sequence:NP_001003917.2Re-query CCDS DB by Nucleotide ID:NM_001003917Re-query CCDS DB by Protein ID:NP_001003917
Current member NCBI NM_001003917.5 NP_001003917.2 Accepted alive Link to Nucleotide Sequence:NM_001003917.5Link to Protein Sequence:NP_001003917.2Re-query CCDS DB by Nucleotide ID:NM_001003917Re-query CCDS DB by Protein ID:NP_001003917Link to BLAST:NP_001003917.2
Original member NCBI NM_001288612.1 NP_001275541.1 Updated not alive Link to Nucleotide Sequence:NM_001288612.1Link to Protein Sequence:NP_001275541.1Re-query CCDS DB by Nucleotide ID:NM_001288612Re-query CCDS DB by Protein ID:NP_001275541
Current member NCBI NM_001288612.2 NP_001275541.1 Accepted alive Link to Nucleotide Sequence:NM_001288612.2Link to Protein Sequence:NP_001275541.1Re-query CCDS DB by Nucleotide ID:NM_001288612Re-query CCDS DB by Protein ID:NP_001275541Link to BLAST:NP_001275541.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003917.2 839 Q68FE2-1 839 100% 0 0
NP_001275541.1 839 Q68FE2-1 839 100% 0 0

Chromosomal Locations for CCDS 35622.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75181926 75181931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75182592 75182737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75182894 75183116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75184456 75184573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75184689 75184867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75185053 75185301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75185666 75185845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75185951 75186104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75186190 75186938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75187685 75187826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75187945 75188106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75189563 75189627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75190112 75190155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75190303 75190405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2520 nt):
ATGGCACAGTTTGACACTGAATACCAGCGCCTAGAGGCCTCCTATAGCGATTCGCCCCCCGGGGAAGAGG
ACCTGTTGGTGCATGTGGCCGAGGGGAGCAAATCACCTTGGCACCACATTGAAAACCTTGACCTCTTCTT
CTCTCGAGTTTATAATCTCCACCAGAAGAATGGCTTCACATGTATGCTCATTGGAGAGATGTTTGAACTC
ATGCAGTTCCTCTTTGTGGTTGCCTTCACCACCTTCCTGGTTAGCTGTGTGGACTATGACATCCTCTTTG
CCAACAAGATGGTGAACCACAGTCTCCATCCTACTGAGCCTGTCAAGGTCACTCTGCCAGATGCCTTTTT
GCCTGCCCAAGTCTGTAGTGCCAGGATTCAGGAAAATGGCTCTCTTATCACCATCCTGGTCATTGCTGGT
GTCTTCTGGATCCACCGGCTTATCAAGTTTATCTATAACATTTGCTGCTATTGGGAGATCCACTCCTTCT
ACCTACATGCTCTTCGGATCCCAATGTCTGCCCTTCCATACTGCACATGGCAGGAAGTTCAGGCCCGGAT
TGTGCAGACGCAGAAAGAGCATCAGATCTGCATCCACAAGCGTGAGCTGACAGAGTTGGACATCTACCAT
CGCATCCTACGTTTCCAGAACTACATGGTGGCCCTGGTGAACAAATCCCTCCTGCCTCTGCGCTTCCGTC
TGCCCGGCCTCGGAGAGGTTGTCTTCTTCACCCGTGGCCTCAAGTACAACTTTGAGCTCATCCTCTTCTG
GGGACCCGGCTCTCTGTTTCTCAATGAGTGGAGCCTCAAGGCCGAGTACAAACGTGGAGGGCAACGGCTA
GAGCTGGCCCAGCGTCTCAGCAACCGCATCTTGTGGATTGGCATCGCCAACTTCCTGCTGTGTCCCCTCA
TCCTCATCTGGCAGATCCTCTATGCCTTCTTCAGCTATGCCGAGGTGCTGAAGAGAGAGCCGGGGGCCCT
GGGAGCGCGTTGCTGGTCACTCTATGGCCGTTGTTACCTCCGCCACTTCAATGAGCTGGAGCATGAGCTG
CAGTCCCGCCTCAACCGAGGCTACAAGCCCGCCTCCAAGTACATGAATTGCTTCTTGTCACCGCTGCTGA
CTCTGCTGGCCAAGAATGGTGCCTTCTTCGCTGGCTCTATCCTGGCTGTGCTTATTGCCCTCACCATCTA
TGATGAAGATGTGTTAGCTGTGGAACACGTCCTCACCACGGTCACCCTCCTGGGAGTCACGGTGACTGTG
TGCAGGTCCTTCATCCCAGACCAGCACATGGTGTTCTGCCCCGAGCAGCTGCTCCGAGTGATTCTTGCAC
ACATCCACTACATGCCTGACCACTGGCAGGGTAATGCCCACCGCTCGCAGACCCGGGACGAGTTTGCCCA
GCTCTTCCAGTACAAGGCAGTGTTCATCTTGGAGGAGTTGCTGAGTCCCATCGTCACACCCCTCATTCTC
ATCTTCTGCCTCCGCCCTCGGGCCCTGGAGATCATAGACTTCTTCCGCAACTTTACGGTCGAGGTCGTGG
GTGTGGGAGACACCTGCTCCTTTGCTCAGATGGACGTTCGCCAGCATGGCCATCCTCAGTGGCTGTCTGG
AGGGCAGACAGAGGCCTCAGTGTACCAGCAAGCCGAGGACGGGAAGACCGAGTTGTCGCTCATGCACTTT
GCCATCACCAATCCCGGCTGGCAGCCCCCTCGTGAGAGCACAGCTTTCCTGGGCTTCCTCAAGGAGCAGG
TGCAGCGAGATGGAGCAGCTGCTGGCCTGGCCCAGGGTGGCCTGCTCCCCGAGAATGCCCTCTTCACATC
CATCCAGTCCTTACAGTCTGAGTCCGAGCCACTGAGCCTTATTGCAAATGTGGTAGCAGGCTCATCCTGC
CGAGGACCCTCACTGTCCAGAGACCTGCAGGGCTCCAGGCACAGGGCTGATGTTGCTTCTGCCCTTCGAT
CCTTCTCCCCTCTGCAGCCTGGAGCGGCCCCTCAAGGCCGGGTTCCCAGTACCATGACAGGCTCTGGAGT
GGATGCCAGGACAGCCAGCTCTGGGAGTAGCGTGTGGGAAGGACAGCTGCAGAGCCTGGTGCTGTCCGAA
TACGCGTCCACCGAGATGAGCCTGCACGCCCTGTACATGCACCAGCTCCACAAGCAGCAGACCCAGGCTG
AGCCCGAGCGGCATGTGTGGCACCGCCGGGAGAGTGATGAGAGTGGAGAGAGTGCCCCTGAAGAGGGGGG
AGAGGGTGCCCGGGCCCCCCAACCCATCCCCCGCTCGGCCAGCTATCCCTGTGCTACACCCCGGCCTGGA
GCACCTGAGACCACCGCCCTGCATGGGGGCTTCCAGAGGCGCTACGGGGGCATCACAGATCCTGGCACAG
TGCCCCGTGGCCCCTCTCACTTCTCCAGGCTGCCCCTGGGAGGATGGGCAGAAGATGGCCAGCCAGCATC
AAGGCACCCAGAGCCGGTGCCAGAGGAGGGCTCAGAGGATGAACTCCCCCCTCAAGTGCACAAGGTATAG

Translation (839 aa):
MAQFDTEYQRLEASYSDSPPGEEDLLVHVAEGSKSPWHHIENLDLFFSRVYNLHQKNGFTCMLIGEMFEL
MQFLFVVAFTTFLVSCVDYDILFANKMVNHSLHPTEPVKVTLPDAFLPAQVCSARIQENGSLITILVIAG
VFWIHRLIKFIYNICCYWEIHSFYLHALRIPMSALPYCTWQEVQARIVQTQKEHQICIHKRELTELDIYH
RILRFQNYMVALVNKSLLPLRFRLPGLGEVVFFTRGLKYNFELILFWGPGSLFLNEWSLKAEYKRGGQRL
ELAQRLSNRILWIGIANFLLCPLILIWQILYAFFSYAEVLKREPGALGARCWSLYGRCYLRHFNELEHEL
QSRLNRGYKPASKYMNCFLSPLLTLLAKNGAFFAGSILAVLIALTIYDEDVLAVEHVLTTVTLLGVTVTV
CRSFIPDQHMVFCPEQLLRVILAHIHYMPDHWQGNAHRSQTRDEFAQLFQYKAVFILEELLSPIVTPLIL
IFCLRPRALEIIDFFRNFTVEVVGVGDTCSFAQMDVRQHGHPQWLSGGQTEASVYQQAEDGKTELSLMHF
AITNPGWQPPRESTAFLGFLKEQVQRDGAAAGLAQGGLLPENALFTSIQSLQSESEPLSLIANVVAGSSC
RGPSLSRDLQGSRHRADVASALRSFSPLQPGAAPQGRVPSTMTGSGVDARTASSGSSVWEGQLQSLVLSE
YASTEMSLHALYMHQLHKQQTQAEPERHVWHRRESDESGESAPEEGGEGARAPQPIPRSASYPCATPRPG
APETTALHGGFQRRYGGITDPGTVPRGPSHFSRLPLGGWAEDGQPASRHPEPVPEEGSEDELPPQVHKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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