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Report for CCDS22822.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22822.2 Public Mus musculus 9 Kdm4d 23 108 98 CCDS HistoryNCBI Gene:244694Re-query CCDS DB by CCDS ID:22822.2See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22822.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058796.6 ENSMUSP00000061632.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058796.6Link to Ensembl Protein Viewer:ENSMUSP00000061632.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000058796Re-query CCDS DB by Protein ID:ENSMUSP00000061632
Original member NCBI NM_173433.2 NP_775609.2 Updated not alive Link to Nucleotide Sequence:NM_173433.2Link to Protein Sequence:NP_775609.2Re-query CCDS DB by Nucleotide ID:NM_173433Re-query CCDS DB by Protein ID:NP_775609
Current member NCBI NM_173433.3 NP_775609.2 Accepted alive Link to Nucleotide Sequence:NM_173433.3Link to Protein Sequence:NP_775609.2Re-query CCDS DB by Nucleotide ID:NM_173433Re-query CCDS DB by Protein ID:NP_775609Link to BLAST:NP_775609.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775609.2 510 Q3U2K5 510 100% 0 0

Chromosomal Locations for CCDS 22822.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 14463028 14464560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGAAGACGAAGTCCACATGTGCTCAGAATCCAAATTGCAGCATAATGATATTTCGTCCAACCAAAGAAG
AG
TTTAATGATTTTGACAAATACATTGCTTACATGGAGTCCCAAGGGGCACACCGAGCTGGACTGGCCAA
G
GTCATCCCACCAAAAGAATGGAGGGCCAGGCAGTCTTATGACAATATCAGCAACATCTTAATAGCAACT
CCC
CTGCAGCAAGTGGTCTCTGGGCAGGCAGGCGTGTTCACCCAATACCATAAGAAGAAGAAAGGCATGA
CA
GTGGGGGAGTACCGTGAGCTGGCCAACAGCAAAAAGTACCAGACCCCGCCACACCTGGATTTTGAAGA
T
TTGGAGCGAAAATACTGGAAGAATCGCCTGTATGAGTCACCGATTTATGGTGCTGACGTCAGCGGCTCC
CTG
TTTGATGGGAAGACTCAACAGTGGAATGTGGGTCACCTGGGAACAATTCAAGACCTATTGGAACAGG
AA
TGTGGCATAGTGATTGAGGGCGTCAACACGCCCTACCTGTACTTTGGCATGTGGAAGACCACCTTTGC
G
TGGCACACGGAGGACATGGACCTGTACAGTATCAACTACCTACACTTTGGGCAGCCCAAGACCTGGTAT
GCT
GTGCCCCCTGAGCATGGCAGGCGCCTGGAGCGCCTGGCCAGGGAACTCTTCCCTGGCAGCTCCCAGG
GC
TGCCAGGCCTTCCTGAGGCACAAGGTGGCGCTCATCTCGCCCACTGTGCTTAAGGAGAATGGCATCCC
C
TTTGGTCGCATCACCCAGGAGGCTGGGGAGTTCATGGTCACCTTTCCCTATGGCTACCACGCGGGCTTC
AAC
CATGGCTTCAACTGCGCAGAGGCCATCAATTTTGCCACCCCAAGGTGGATTGACTATGGCAAGGTGG
CA
TCTCAGTGCAGCTGTGGGGAGGCCAGGGTGAGCTTCTCCATGGACGCCTTTGTGAGGATCTTGCAGCC
T
GAGCGATATGAACTGTGGAAACGTGGCCAAGATCAGGCAGTTGTGGACCACACAGAGACTATGGTGTCT
ACC
AGTCAGGAGCTCACCACCCGGCGGGTGACCAAAGCACCAAGAAAAACTTGGGGCTTGAAGCGTCTCC
GG
CTTCGCCAGGTCTCACGATCTCTTCTGCCTATAGCCACGGTAAGTAACGTTCCTTGCAACATGCAGGT
G
TGCCACACCTCCAGGCAACCATCAGATGTGAAAGGTGATGATGTCCAGAAGTCTGACTCAGCCAGAGCC
TCA
CCACATCCTCTGAGTCTGCCTTCTTCTGGTCACATGTCAACTAGAAGATGTAGTCTTGGTCGTCGTC
CT
TGTGAACTAGGAGCTCAGGAGTCCTCCAATGGAGCTCCAGTCAAGAGGCAACTTCCAGCAGGCAGAGA
T
GACACAAGCCCCAGTCCAGAGCTTCAGCCCCAGGCTGTGAGTGGAGACTTAATAGTCGACTCAGGACTT
GTG
AACCCTGGCCCACAGCATCTTATGACAGCTTCTGAAGGGGGATTGACCTCCGACCCCTAA


Translation (510 aa):
MKTKSTCAQNPNCSIMIFRPTKEEFNDFDKYIAYMESQGAHRAGLAKVIPPKEWRARQSYDNISNILIAT
P
LQQVVSGQAGVFTQYHKKKKGMTVGEYRELANSKKYQTPPHLDFEDLERKYWKNRLYESPIYGADVSGS
L
FDGKTQQWNVGHLGTIQDLLEQECGIVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGQPKTWY
A
VPPEHGRRLERLARELFPGSSQGCQAFLRHKVALISPTVLKENGIPFGRITQEAGEFMVTFPYGYHAGF
N
HGFNCAEAINFATPRWIDYGKVASQCSCGEARVSFSMDAFVRILQPERYELWKRGQDQAVVDHTETMVS
T
SQELTTRRVTKAPRKTWGLKRLRLRQVSRSLLPIATVSNVPCNMQVCHTSRQPSDVKGDDVQKSDSARA
S
PHPLSLPSSGHMSTRRCSLGRRPCELGAQESSNGAPVKRQLPAGRDDTSPSPELQPQAVSGDLIVDSGL
V
NPGPQHLMTASEGGLTSDP




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 Genome Browser Links:   Ensembl Genome Browser
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