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Report for CCDS40294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40294.1 Public Mus musculus 8 Kat6a 23 108 98 CCDS HistoryNCBI Gene:244349Re-query CCDS DB by CCDS ID:40294.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40294.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044331.6 ENSMUSP00000038181.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044331.6Link to Ensembl Protein Viewer:ENSMUSP00000038181.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000044331Re-query CCDS DB by Protein ID:ENSMUSP00000038181
Original member Current member EBI ENSMUST00000110696.7 ENSMUSP00000106324.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110696.7Link to Ensembl Protein Viewer:ENSMUSP00000106324.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110696Re-query CCDS DB by Protein ID:ENSMUSP00000106324
Original member Current member NCBI NM_001081149.2 NP_001074618.1 Accepted alive Link to Nucleotide Sequence:NM_001081149.2Link to Protein Sequence:NP_001074618.1Re-query CCDS DB by Nucleotide ID:NM_001081149Re-query CCDS DB by Protein ID:NP_001074618Link to BLAST:NP_001074618.1
Original member Current member NCBI NM_001364449.1 NP_001351378.1 Accepted alive Link to Nucleotide Sequence:NM_001364449.1Link to Protein Sequence:NP_001351378.1Re-query CCDS DB by Nucleotide ID:NM_001364449Re-query CCDS DB by Protein ID:NP_001351378Link to BLAST:NP_001351378.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074618.1 2003 Q8BZ21 2003 99.9501% 0 1
NP_001351378.1 2003 Q8BZ21 2003 99.9501% 0 1

Chromosomal Locations for CCDS 40294.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22862202 22862801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22903108 22903216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22907646 22907761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22908243 22908324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22910132 22910267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22911660 22911976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22914269 22914387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22919325 22919440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22923515 22923656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22925281 22925442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22926377 22926470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22929216 22929447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22930165 22930378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22932115 22932714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22935480 22935798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22937989 22940642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6012 nt):
ATGGTAAAACTCGCTAACCCGCTGTACACGGAGTGGATTTTGGAGGCCATCAAAAAAGTCAAGAAGCAGA
AACAGCGACCTTCAGAGGAAAGGATCTGCAATGCCGTGTCCTCATCCCATGGGCTGGACCGCAGGACTGT
GCTAGAGCAGCTGGAGCTGAGCGTCAAAGACGGGACGATTTTAAAGGTCTCAAACAAAGGTCTCAATTCC
TACAAAGATCCTGATAATCCTGGGCGAATAGCACTTCCTAAACCTCGGAACCATGGAAAATTGGATACTA
AGCAAAGTGTGGATTGGAATAAATTACTCAAGCGGGCATTTGAGGGCTTGGCAGAGACTGGTGGCTCAAC
TTTGAAAAGTATCGAACGTTTTTTGAAAAGCCAGAAGGATGTATCTGCTGCCTGTGGAGGTAGTGCTGCC
CCTGGGTTTCACCAGCAGCTACGATTGGCCATCAAGCGTGCTGTTGGTCATGGCCGACTCCTCAAAGATG
GACCCCTCTACCGCCTCAACACTAAGGCAGCCAGTGCTGAAGGGAAAGAGGGCTGTGAGTCGCTCTCGTG
TTTACCTCCCGTGTCACTGCTTCCACACGAGAAAGACAAGCCGGTTGCTGAACCAATCCCCATCTGTAGC
TTCTGTCTTGGTACAAAAGAGCAGAACCGGGAGAAGCAGCCCGAGGAACTCGTCTCCTGCGCGGACTGCG
GCAATAGCGGTCATCCATCGTGTTTAAAGTTCTCCCCAGAGCTAACAGTGAGAGTGAAGGCCTTACGGTG
GCAGTGCATTGAGTGTAAAACATGCAGCTCCTGTCGTGACCAAGGCAAAAACGCAGATAACATGCTCTTT
TGTGACTCATGTGACCGAGGTTTTCACATGGAGTGTTGTGACCCACCACTTACACGGATGCCAAAAGGTA
TGTGGATATGTCAGATATGCCGACCTAGGAAAAAAGGACGGAAACTTCTACAAAAGAAGGCGGCACAGAT
AAAACGGCGCTATGCTAATCCAATAGGACGTCCAAAAAACAGGTTAAAGAAACAAAACACGGTATCAAAA
GGTCCCTTTAGCAAAGTTCGAACTGGTCCTGGAAGGGGTCGGAAACGTAAAATCACTGTCTCCAGCCAGT
CTGCATCATCATCAGAAGAAGGCTATTTAGAGCGGATAGATGGCTTGGACTTCTGCAGAGATAGCAATGC
CCCCTTGAAGTTCAACAAGAAAACCAAAGGGCTCATTGATGGCCTTACCAAATTCTTCACCCCTTCTCCT
GATGGGCGGAAAGCCCGAGGGGAAGTGGTAGACTACTCTGAGCAATACAGAATCAGGAAAAAGGGCAACA
GGAAATCAAGTACTTCAGATTGGCCCACAGACAATCAGGACGGCTGGGAAAGCAAACAAGAAAATGAGGA
ACGGCTTTTTGGGAGCCAAGAAATCATGACTGAAAGAGATATGGAATTGTTTCGTGATATCCAAGAACAA
GCACTGCAGAAGGTCGGAGTAACTGGGCCCCCTGATCCACAAGTCCGCTGTCCCTCTGTCATTGAGTTTG
GGAAGTATGAAATCCACACCTGGTATTCCTCTCCGTACCCTCAGGAGTACTCAAGGCTGCCTAAATTGTA
TCTTTGTGAGTTCTGTCTAAAATATATGAAAAGTAGAACTATTCTACAGCAGCACATGAAGAAATGTGGT
TGGTTCCATCCTCCTGCCAATGAGATTTACCGAAAGAATAATATTTCTGTCTTTGAGGTTGATGGGAACG
TGAGTACCATTTATTGTCAAAATCTGTGTCTCTTGGCAAAGTTGTTTCTTGACCACAAAACACTCTATTA
TGACGTGGAGCCATTTCTTTTCTATGTTCTAACACAGAATGATGTCAAGGGCTGCCACCTTGTTGGCTAC
TTTTCTAAAGAAAAGCACTGCCAACAGAAATACAATGTCTCCTGTATAATGATTCTTCCCCAATACCAAC
GTAAGGGCTACGGCAGGTTTCTCATCGATTTCAGTTATTTGTTATCAAAGCGTGAAGGCCAAGCAGGCTC
TCCTGAGAAACCATTATCAGATCTAGGTCGTCTCTCCTACATGGCTTACTGGAAGAGTGTGATCCTGGAG
TGCCTTTATCACCAAAATGACAAGCAGATCAGCATCAAGAAGCTGAGCAAGCTGACTGGAGTCTGCCCTC
AGGACATCACGTCCACACTGCACCACCTACGAATGCTGGACTTCCGCAGTGACCAATTTGTGATTATCCG
CCGGGAGAAACTTATCCAGGATCACATGGCAAAGCTGCAGCTGAACCTTCGGCCTGTAGATGTAGATCCA
GAGTGCTTACGCTGGACTCCAGTCATAGTCTCCAATTCTGTGGTCTCCGAGGATGAAGACGAGGAGGCCG
ATGAGGGAGAGAAAGAAGAGCCCCAAGGCCAAGAAAGAGAGCTAGAGACCAGGGTAAAGGTGGGGAAGTC
TGTGTCTCGGGAGAAAAAAGATCAGGAGTCTTCCTCTTTAATAGAAACTGACAAGAAGCCAGAAGTTAAG
GAACTAGCCAGTTCTTCACGTTTGAGCAAACAGGCCCTTCCTCGGGACAGTCTTCCTGCAAATAGCCAGC
CACCTCGGAGGGGCCGCTGTGGGAGGAAGAACAGAAAGACACAAGAACGCTTTGGTGATAAAGATTCTAA
GATGCTTGTGGATGAGACACTATCCGCTTCTCAAGAGCAATATGGAGACTGCGAGGAAAAGTCAGAAACC
TCCCAAGAACGGTTCACTGAGATGGAAGAGCAGTTGGCAGCCCCTCAAGTGCAAGCAGACGGGAAACCAG
ACATCCCCAAGGGGAGGTTCAGTGAGAGCGTTGAGTTGTGGCGAGGACAGCTGAAGAAAAGCCCTGAGAC
CCTGAAGTGCCGATTGCCAGAAGGAAATGACCGGCTTCCGTGCTGCTACACCGATGGTGACAGGGCTGTC
TTTAGGGGCTTCAGCGAGAGCAGTGAGGAGGAGGAAGAGCCAGAGAGTCCCCGGTCAAACTCGCCACCAA
TTCTCACGAAGCCCACACTGAAAAGAAAGAAACCGATTCTTCACCGAAGACGAAGAGTCCGCAAGCGGAA
ACACCACAATAGCAGTGTAGTCACAGAGACCATCTCTGAGACCACGGAGGTGTTAGATGAGCCTTTTGAA
GACTCTGACTCTGAGAGACCAATGCCACGACTGGAGCCTACATTTGAGATGGAGGAAGAGGAGGAGGAGG
AGGAGGAGGAGAGTGAGCTCTTCCCCAGAGGGTACTTCCATTGCCTGTCCTCACAGGACATCCTTAGGTG
TCAGTCCTCCTCCAAGAGGCCGTCTAAAGAGGAAGAGGAGGAGGAGGAGGAGTCAGACGACGCAGATGAC
ACTCCTGTCCTAAAGCCAGTATCTCTCTTGCGAAAATGTGATGTGAACAGTGCTTCACTTGAGCCAGATA
CCTCTACACCTATGAAAAAGAAAAAGGGATGGCCCAAAGGCAAGAGCCGAAAACCTATCCACTGGAAGAA
AAGGCCTGGACGGAAACCAGGATTTAAATTGAATCAGGAAATCATAGCTGCTTCTGCACAGGAATGCATA
GTTGAGCCCGTAGTCCCCATTAAACCAGGCCGTAAACCCAGAACTCAAGAGAATGAAGAAATTGTTGAGG
TAAAGGAGGACTTGCTGGAAGAAAGGAAAGAAGAGATGCACACAGAACCAGATGAGGAGGCCGAAGAGGA
AGAGGATACAACCAGCAGTGACATTAGAGCCATGTCCCCATTGGACAGCAGCAACAGCCCTGAGGCAGAA
CCAAAAGAACCCGAGCCAGAGGAGGAAGACGAGAAGCCTTCGGACGATCAGAGGCAGTCAGAGGAAGAGC
CCCAAGAGCTGGAGGAGCAGGAGCAGGAGGAAGAAGATGAAGTGACCACAGAGGCCAACCAGAACGAAGA
CCATGACGCTGACGATGAGGACGAAGGCCACCTGGATTCGCTAAAGACAAAAGAGCCAGAGGAGCAGCCA
GCTAGAGAAGACGACAAGGAGGAGCCTGGCATCCAGGGATCTTTTTTAGCTGCAAACATGCAGGACAGTA
GGGAGAATACAAAGGATAAAGATGAGGCTGAACCGGATTCTGAGGAAGACCAGCCTTCCCATGAGGCTTC
TGTGGTATCAGAAACCATGCCAGGCTCAGAGGAGGACCATGAGGAAGACTCCAACACTAAGGAAGAGTTA
ATTGAGCTAAAGGAGGAGGAAGAGATCCCACACAGCGAACTGGACCTGGAGACTGTACAGGCAGTGCAAT
CTTTGACTCAAGAAGAAAGCAGTGAGCATGAAGGAGCCTACCAGGACTGTGAAGAAACTCTTGCAGCCTG
CCAGACACTGCAGAGTTACACCCACACTGATGAGGACCCCCAGATGTCAATGGTTGAAGACTGTCATGCT
TCAGAGCATAATAGCCCGATATCCTCCATTCCGTCTCATCCTAGCCAGTCAGTCCGCTCTGTCAACAGCC
CCAGCATGCCTGCCCTGGAGAGTGGCTACACACAGATCAGCCCAGAGCAAGGATCCCTGTCCGCACCCTC
TATGCAGAACATGGAGACCAGCCCCATGATGGATGTGCCTTCCGTATCAGACCACTCTCAGCAGGTGGTA
GACAGCGGCTTCAGTGATCTGGGCAGCATCGAGAGTACCACAGAGAACTATGAGAACCCAAGCAGCTATG
ATTCCACCATGGGCAGCAGCATTTGTGGGAATAATTCCTCTCAGAGCAGCTGCTCGTATGGCGGCCTGTC
GTCTTCAAGCAGCCTCACCCAGAACAGTTGTGTTGTTACTCAGCAAATGGCCAACATGGGCAACAGCTGC
AGCATGCTGCAACAGAACACTGTCCAACCAGCCGCCAACTGCAATATCAAGTCACCGCAGACTTGTGTGG
TGGAAAGGCCTCCCAGTAACCAGCAGCCACCCCCGCCACCACCCCCGCCGCCACCACCACAGCAGCCGCA
GCCGCCGCCACAGCAACAGGCGGCCCCACAGCCTCCCCCACCACAGCCGCAGCAGCAGCAGCAGCAACAG
CAGCAGCCCCCTCCACCACAGCAGCAGCCCCAGCCCCCTCCACCACAGCAGCAGCCCCCTCTGTCTCAGT
GCAGTATGAACAACAGCTTCACTGCAGCCCCCATGATAATGGAGATACCCGAGTCTGGAAGCACTGGGAA
TATCAGTATCTACGAGAGGATTCCAGGGGATTTTGGTGCAGGCAGCTACTCCCAACCATCAGCCACCTTC
AGTCTAGCCAAGCTGCAGCAGCTGACCAACACCATCATGGACCCTCATGCCATGCCTTACAGTCATTCTC
CGGCTGTGACTTCCTATGCAACCAGTGTTTCTCTGTCCAACACGGGACTGGCTCAGCTAGCTCCATCTCA
TCCCTTAGCCGGGACCCCTCAAGCACAAGCCACCATGACTCCACCCCCAAATCTGGCGTCTACTACTATG
AACCTCACGTCACCTCTGCTACAGTGCAACATGTCTGCCACCAACATCGGAATTCCTCACACTCAGAGGT
TGCAAGGGCAGATGCCAGTCAAGGGGCACATTTCTATCCGTTCCAAGTCTGCACCTTTACCCTCTGCAAC
TGCACACCAACAGCAGCTATATGGCCGCAGCCCACCAGCAGTTGCCATGCAGGCTGGCCCTCGTGCATTG
GCTGTTCAGCGTGGCATGAACATGGGGGTTAATTTAATGCCCACTCCAGCCTATAATGTCAATTCCATGA
ATATGAACACCTTGAATGCCATGAACAGTTATCGAATGACACAGCCCATGATGAACAGCAGTTACCATAG
TAACCCTGCCTACATGAACCAGACAGCACAGTATCCTATGCAGATGCAGATGGGGATGATGGGAAGCCAG
GCCTATACCCAGCAGCCTATGCAGCCAAACCCTCACGGGAACATGATGTACACTGGCCCCTCCCATCACA
GCTACATGAATGCTGCTGGCGTGCCCAAGCAGTCACTTAACGGACCTTACATGAGGAGATGA

Translation (2003 aa):
MVKLANPLYTEWILEAIKKVKKQKQRPSEERICNAVSSSHGLDRRTVLEQLELSVKDGTILKVSNKGLNS
YKDPDNPGRIALPKPRNHGKLDTKQSVDWNKLLKRAFEGLAETGGSTLKSIERFLKSQKDVSAACGGSAA
PGFHQQLRLAIKRAVGHGRLLKDGPLYRLNTKAASAEGKEGCESLSCLPPVSLLPHEKDKPVAEPIPICS
FCLGTKEQNREKQPEELVSCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLF
CDSCDRGFHMECCDPPLTRMPKGMWICQICRPRKKGRKLLQKKAAQIKRRYANPIGRPKNRLKKQNTVSK
GPFSKVRTGPGRGRKRKITVSSQSASSSEEGYLERIDGLDFCRDSNAPLKFNKKTKGLIDGLTKFFTPSP
DGRKARGEVVDYSEQYRIRKKGNRKSSTSDWPTDNQDGWESKQENEERLFGSQEIMTERDMELFRDIQEQ
ALQKVGVTGPPDPQVRCPSVIEFGKYEIHTWYSSPYPQEYSRLPKLYLCEFCLKYMKSRTILQQHMKKCG
WFHPPANEIYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDVKGCHLVGY
FSKEKHCQQKYNVSCIMILPQYQRKGYGRFLIDFSYLLSKREGQAGSPEKPLSDLGRLSYMAYWKSVILE
CLYHQNDKQISIKKLSKLTGVCPQDITSTLHHLRMLDFRSDQFVIIRREKLIQDHMAKLQLNLRPVDVDP
ECLRWTPVIVSNSVVSEDEDEEADEGEKEEPQGQERELETRVKVGKSVSREKKDQESSSLIETDKKPEVK
ELASSSRLSKQALPRDSLPANSQPPRRGRCGRKNRKTQERFGDKDSKMLVDETLSASQEQYGDCEEKSET
SQERFTEMEEQLAAPQVQADGKPDIPKGRFSESVELWRGQLKKSPETLKCRLPEGNDRLPCCYTDGDRAV
FRGFSESSEEEEEPESPRSNSPPILTKPTLKRKKPILHRRRRVRKRKHHNSSVVTETISETTEVLDEPFE
DSDSERPMPRLEPTFEMEEEEEEEEEESELFPRGYFHCLSSQDILRCQSSSKRPSKEEEEEEEESDDADD
TPVLKPVSLLRKCDVNSASLEPDTSTPMKKKKGWPKGKSRKPIHWKKRPGRKPGFKLNQEIIAASAQECI
VEPVVPIKPGRKPRTQENEEIVEVKEDLLEERKEEMHTEPDEEAEEEEDTTSSDIRAMSPLDSSNSPEAE
PKEPEPEEEDEKPSDDQRQSEEEPQELEEQEQEEEDEVTTEANQNEDHDADDEDEGHLDSLKTKEPEEQP
AREDDKEEPGIQGSFLAANMQDSRENTKDKDEAEPDSEEDQPSHEASVVSETMPGSEEDHEEDSNTKEEL
IELKEEEEIPHSELDLETVQAVQSLTQEESSEHEGAYQDCEETLAACQTLQSYTHTDEDPQMSMVEDCHA
SEHNSPISSIPSHPSQSVRSVNSPSMPALESGYTQISPEQGSLSAPSMQNMETSPMMDVPSVSDHSQQVV
DSGFSDLGSIESTTENYENPSSYDSTMGSSICGNNSSQSSCSYGGLSSSSSLTQNSCVVTQQMANMGNSC
SMLQQNTVQPAANCNIKSPQTCVVERPPSNQQPPPPPPPPPPPQQPQPPPQQQAAPQPPPPQPQQQQQQQ
QQPPPPQQQPQPPPPQQQPPLSQCSMNNSFTAAPMIMEIPESGSTGNISIYERIPGDFGAGSYSQPSATF
SLAKLQQLTNTIMDPHAMPYSHSPAVTSYATSVSLSNTGLAQLAPSHPLAGTPQAQATMTPPPNLASTTM
NLTSPLLQCNMSATNIGIPHTQRLQGQMPVKGHISIRSKSAPLPSATAHQQQLYGRSPPAVAMQAGPRAL
AVQRGMNMGVNLMPTPAYNVNSMNMNTLNAMNSYRMTQPMMNSSYHSNPAYMNQTAQYPMQMQMGMMGSQ
AYTQQPMQPNPHGNMMYTGPSHHSYMNAAGVPKQSLNGPYMRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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